SCOPe 2.08: Structural Classification of Proteins

PDB entry 7eb4

View 7eb4 on RCSB PDB site
Description: cryo-em structure of sars-cov-2 spike d614g variant, two rbd-up conformation 1
Deposited on 2021-03-08, released 2021-06-23
The last revision was dated 2022-01-05, with a file datestamp of 2021-12-31.
Experiment type: EM
Resolution: 3.5 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Spike glycoprotein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Uniprot P0DTC2 (0-1207)
  - variant (613)
  - conflict (681-682)
  - conflict (684)
  - conflict (985-986)
  - expression tag (1208-1282)
Chain 'B':
Compound: Spike glycoprotein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Uniprot P0DTC2 (0-1207)
  - variant (613)
  - conflict (681-682)
  - conflict (684)
  - conflict (985-986)
  - expression tag (1208-1282)
Chain 'C':
Compound: Spike glycoprotein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Uniprot P0DTC2 (0-1207)
  - variant (613)
  - conflict (681-682)
  - conflict (684)
  - conflict (985-986)
  - expression tag (1208-1282)
Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

Chain 'A':
Sequence, based on SEQRES records:

>7eb4A (A:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqgvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnspgsassvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqefgsggyipeaprdgqayvrkdgewvllstflkgqdnsadiqhsgrplesrg
pfeqkliseedlnmhtghhhhhh

Sequence, based on observed residues (ATOM records):

>7eb4A (A:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihdnpvlpfndgvyfaste
ksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvvyssannctfeyv
sqfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtlla
lhayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvq
ptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcyg
vsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnl
dskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptn
gvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflp
fqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqgvnctevp
vystgsnvfqtragcligaehvnnsyecdipigagicasyqsiiaytmslgaensvaysn
nsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltg
iaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtfn
gltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqnvl
yenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaissv
lndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlgq
skrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpregvfv
sngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpeld

Chain 'B':
Sequence, based on SEQRES records:

>7eb4B (B:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqgvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnspgsassvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqefgsggyipeaprdgqayvrkdgewvllstflkgqdnsadiqhsgrplesrg
pfeqkliseedlnmhtghhhhhh

Sequence, based on observed residues (ATOM records):

>7eb4B (B:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihdnpvlpfndgvyfaste
ksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvvyssannctfeyv
sqfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtlla
lhayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvq
ptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcyg
vsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnl
dskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptn
gvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflp
fqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqgvnctevp
vaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipigagicasyqsiiayt
mslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqy
gsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrs
fiedllfnkvtlfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqm
ayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntl
vkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasa
nlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaic
hdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplq
peld

Chain 'C':
Sequence, based on SEQRES records:

>7eb4C (C:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqgvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnspgsassvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqefgsggyipeaprdgqayvrkdgewvllstflkgqdnsadiqhsgrplesrg
pfeqkliseedlnmhtghhhhhh

Sequence, based on observed residues (ATOM records):

>7eb4C (C:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihdnpvlpfndgvyfaste
ksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvvyssannctfeyv
sqfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtlla
lhayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvq
ptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcyg
vsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnl
dskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptn
gvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflp
fqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqgvnctevp
wrvystgsnvfqtragcligaehvnnsyecdipigagicasyqsiiaytmslgaensvay
snnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnral
tgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvt
kfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtq
nvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgai
ssvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecv
lgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpreg
vfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpeld