SCOPe 2.08: Structural Classification of Proteins

PDB entry 7dzw

View 7dzw on RCSB PDB site
Description: apo spike protein from sars-cov2
Deposited on 2021-01-26, released 2021-06-02
The last revision was dated 2021-07-07, with a file datestamp of 2021-07-02.
Experiment type: EM
Resolution: 3.45 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Spike glycoprotein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Uniprot P0DTC2 (0-1240)
  - engineered mutation (600)
  - engineered mutation (668-669)
  - engineered mutation (671)
  - engineered mutation (972-973)
  - expression tag (1241-1248)
Chain 'B':
Compound: Spike glycoprotein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Uniprot P0DTC2 (0-1240)
  - engineered mutation (600)
  - engineered mutation (668-669)
  - engineered mutation (671)
  - engineered mutation (972-973)
  - expression tag (1241-1248)
Chain 'C':
Compound: Spike glycoprotein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Uniprot P0DTC2 (0-1240)
  - engineered mutation (600)
  - engineered mutation (668-669)
  - engineered mutation (671)
  - engineered mutation (972-973)
  - expression tag (1241-1248)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

Chain 'A':
Sequence, based on SEQRES records:

>7dzwA (A:)
qcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgt
ngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcef
qfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefv
fknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgd
sssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiy
qtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsas
fstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcv
iawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplq
sygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvlt
esnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyq
gvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipigagicas
yqtqtnspgsagsvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtk
tsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktpp
ikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdclgdiaardlicaq
kfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtq
nvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgai
ssvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecv
lgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpreg
vfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpeldsfkeeld
kyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqyikwp
wyiwlgfiagliaivmvtimlccmtsccsclkgccscgscchhhhhhhh

Sequence, based on observed residues (ATOM records):

>7dzwA (A:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtngtkrfdnpvlpf
ndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvyyh
knnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfknidgyfkiysk
htpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdsssgwtagaaayy
vgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesi
vrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptk
lndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvg
gnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyq
pyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfg
rdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqgvnctevpvaiha
dqltptwrvystgsnvfqtragcligaehvnnsyecdipigagicasyqtqtnspgsags
vasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgds
tecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqil
pdpskpskrsfiedllfnkvtladagfikqygdclgdiaardlicaqkfngltvlppllt
demiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianq
fnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldp
peaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkg
yhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpregvfvsngthwfvtq
rnfyepqiittdntfvsgncdvvigivnntvydplqpelds

Chain 'B':
Sequence, based on SEQRES records:

>7dzwB (B:)
qcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgt
ngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcef
qfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefv
fknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgd
sssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiy
qtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsas
fstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcv
iawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplq
sygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvlt
esnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyq
gvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipigagicas
yqtqtnspgsagsvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtk
tsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktpp
ikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdclgdiaardlicaq
kfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtq
nvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgai
ssvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecv
lgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpreg
vfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpeldsfkeeld
kyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqyikwp
wyiwlgfiagliaivmvtimlccmtsccsclkgccscgscchhhhhhhh

Sequence, based on observed residues (ATOM records):

>7dzwB (B:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtngtkrfdnpvlpf
ndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvyyh
knnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfknidgyfkiysk
htpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdsssgwtagaaayy
vgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesi
vrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptk
lndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvg
gnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyq
pyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfg
rdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqgvnctevpvaiha
dqltptwrvystgsnvfqtragcligaehvnnsyecdipigagicasyqtqtnspgsags
vasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgds
tecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqil
pdpskpskrsfiedllfnkvtladagfikqygdclgdiaardlicaqkfngltvlppllt
demiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianq
fnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldp
peaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkg
yhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpregvfvsngthwfvtq
rnfyepqiittdntfvsgncdvvigivnntvydplqpelds

Chain 'C':
Sequence, based on SEQRES records:

>7dzwC (C:)
qcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgt
ngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcef
qfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefv
fknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgd
sssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiy
qtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsas
fstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcv
iawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplq
sygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvlt
esnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyq
gvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipigagicas
yqtqtnspgsagsvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtk
tsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktpp
ikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdclgdiaardlicaq
kfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtq
nvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgai
ssvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecv
lgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpreg
vfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpeldsfkeeld
kyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqyikwp
wyiwlgfiagliaivmvtimlccmtsccsclkgccscgscchhhhhhhh

Sequence, based on observed residues (ATOM records):

>7dzwC (C:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtngtkrfdnpvlpf
ndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvyyh
knnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfknidgyfkiysk
htpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdsssgwtagaaayy
vgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesi
vrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptk
lndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvg
gnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyq
pyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfg
rdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqgvnctevpvaiha
dqltptwrvystgsnvfqtragcligaehvnnsyecdipigagicasyqtqtnspgsags
vasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgds
tecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqil
pdpskpskrsfiedllfnkvtladagfikqygdclgdiaardlicaqkfngltvlppllt
demiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianq
fnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldp
peaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkg
yhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpregvfvsngthwfvtq
rnfyepqiittdntfvsgncdvvigivnntvydplqpelds