PDB entry 7dx8

View 7dx8 on RCSB PDB site
Description: S(p) protein of SARS-CoV-2 bound with PD of ACE2 in the conformation 2
Class: virus
Keywords: SARS-CoV-2, VIRUS
Deposited on 2021-01-18, released 2021-03-31
The last revision prior to the SCOPe 2.07 freeze date was dated 2021-03-31, with a file datestamp of 2021-03-26.
Experiment type: EM
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • engineered mutation (985-986)
  • Chain 'B':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • engineered mutation (985-986)
  • Chain 'C':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • engineered mutation (985-986)
  • Chain 'D':
    Compound: Angiotensin-converting enzyme 2
    Species: Homo sapiens [TaxId:9606]
    Gene: ACE2, UNQ868/PRO1885
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7dx8d_
  • Chain 'E':
    Compound: Angiotensin-converting enzyme 2
    Species: Homo sapiens [TaxId:9606]
    Gene: ACE2, UNQ868/PRO1885
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7dx8e_
  • Heterogens: NAG

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >7dx8D (D:)
    masgrsssswlllslvavtaawshpqfekqstieeqaktfldkfnheaedlfyqsslasw
    nyntniteenvqnmnnagdkwsaflkeqstlaqmyplqeiqnltvklqlqalqqngssvl
    sedkskrlntilntmstiystgkvcnpdnpqeclllepglneimansldynerlwawesw
    rsevgkqlrplyeeyvvlknemaranhyedygdywrgdyevngvdgydysrgqliedveh
    tfeeikplyehlhayvraklmnaypsyispigclpahllgdmwgrfwtnlysltvpfgqk
    pnidvtdamvdqawdaqrifkeaekffvsvglpnmtqgfwensmltdpgnvqkavchpta
    wdlgkgdfrilmctkvtmddfltahhemghiqydmayaaqpfllrnganegfheavgeim
    slsaatpkhlksigllspdfqedneteinfllkqaltivgtlpftymlekwrwmvfkgei
    pkdqwmkkwwemkreivgvvepvphdetycdpaslfhvsndysfiryytrtlyqfqfqea
    lcqaakhegplhkcdisnsteagqklfnmlrlgksepwtlalenvvgaknmnvrpllnyf
    eplftwlkdqnknsfvgwstdwspyadqsikvrislksalgdkayewndnemylfrssva
    yamrqyflkvknqmilfgeedvrvanlkprisfnffvtapknvsdiiprtevekairmsr
    srindafrlndnsleflgiqptlgppnqppvsiwlivfgvvmgvivvgiviliftgirdr
    kkknkarsgenpyasidiskgennpgfqntddvqtsf
    

    Sequence, based on observed residues (ATOM records): (download)
    >7dx8D (D:)
    ieeqaktfldkfnheaedlfyqsslaswnyntniteenvqnmnnagdkwsaflkeqstla
    qmyplqeiqnltvklqlqalqqngssvlsedkskrlntilntmstiystgkvcnpdnpqe
    clllepglneimansldynerlwaweswrsevgkqlrplyeeyvvlknemaranhyedyg
    dywrgdyevngvdgydysrgqliedvehtfeeikplyehlhayvraklmnaypsyispig
    clpahllgdmwgrfwtnlysltvpfgqkpnidvtdamvdqawdaqrifkeaekffvsvgl
    pnmtqgfwensmltdpgnvqkavchptawdlgkgdfrilmctkvtmddfltahhemghiq
    ydmayaaqpfllrnganegfheavgeimslsaatpkhlksigllspdfqedneteinfll
    kqaltivgtlpftymlekwrwmvfkgeipkdqwmkkwwemkreivgvvepvphdetycdp
    aslfhvsndysfiryytrtlyqfqfqealcqaakhegplhkcdisnsteagqklfnmlrl
    gksepwtlalenvvgaknmnvrpllnyfeplftwlkdqnknsfvgwstdwspyad
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >7dx8E (E:)
    masgrsssswlllslvavtaawshpqfekqstieeqaktfldkfnheaedlfyqsslasw
    nyntniteenvqnmnnagdkwsaflkeqstlaqmyplqeiqnltvklqlqalqqngssvl
    sedkskrlntilntmstiystgkvcnpdnpqeclllepglneimansldynerlwawesw
    rsevgkqlrplyeeyvvlknemaranhyedygdywrgdyevngvdgydysrgqliedveh
    tfeeikplyehlhayvraklmnaypsyispigclpahllgdmwgrfwtnlysltvpfgqk
    pnidvtdamvdqawdaqrifkeaekffvsvglpnmtqgfwensmltdpgnvqkavchpta
    wdlgkgdfrilmctkvtmddfltahhemghiqydmayaaqpfllrnganegfheavgeim
    slsaatpkhlksigllspdfqedneteinfllkqaltivgtlpftymlekwrwmvfkgei
    pkdqwmkkwwemkreivgvvepvphdetycdpaslfhvsndysfiryytrtlyqfqfqea
    lcqaakhegplhkcdisnsteagqklfnmlrlgksepwtlalenvvgaknmnvrpllnyf
    eplftwlkdqnknsfvgwstdwspyadqsikvrislksalgdkayewndnemylfrssva
    yamrqyflkvknqmilfgeedvrvanlkprisfnffvtapknvsdiiprtevekairmsr
    srindafrlndnsleflgiqptlgppnqppvsiwlivfgvvmgvivvgiviliftgirdr
    kkknkarsgenpyasidiskgennpgfqntddvqtsf
    

    Sequence, based on observed residues (ATOM records): (download)
    >7dx8E (E:)
    ieeqaktfldkfnheaedlfyqsslaswnyntniteenvqnmnnagdkwsaflkeqstla
    qmyplqeiqnltvklqlqalqqngssvlsedkskrlntilntmstiystgkvcnpdnpqe
    clllepglneimansldynerlwaweswrsevgkqlrplyeeyvvlknemaranhyedyg
    dywrgdyevngvdgydysrgqliedvehtfeeikplyehlhayvraklmnaypsyispig
    clpahllgdmwgrfwtnlysltvpfgqkpnidvtdamvdqawdaqrifkeaekffvsvgl
    pnmtqgfwensmltdpgnvqkavchptawdlgkgdfrilmctkvtmddfltahhemghiq
    ydmayaaqpfllrnganegfheavgeimslsaatpkhlksigllspdfqedneteinfll
    kqaltivgtlpftymlekwrwmvfkgeipkdqwmkkwwemkreivgvvepvphdetycdp
    aslfhvsndysfiryytrtlyqfqfqealcqaakhegplhkcdisnsteagqklfnmlrl
    gksepwtlalenvvgaknmnvrpllnyfeplftwlkdqnknsfvgwstdwspyad