PDB entry 7dx0

View 7dx0 on RCSB PDB site
Description: trypsin-digested s protein of sars-cov-2
Deposited on 2021-01-18, released 2021-03-31
The last revision was dated 2021-06-16, with a file datestamp of 2021-06-11.
Experiment type: EM
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • engineered mutation (985-986)
  • Chain 'B':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • engineered mutation (985-986)
  • Chain 'C':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • engineered mutation (985-986)
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7dx0A (A:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqyikwpwyiwlgfiagliaivmvtimlccmtsccsclkgccscgscckfdedd
sepvlkgvklhytledykddddk

    Sequence, based on observed residues (ATOM records):
    >7dx0A (A:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhanpvlpfndgvyfasteksn
iirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvmesefrvyssannctf
eyvsknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtll
alhrsayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnf
rvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfk
cygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawns
nnldskvggnynylyrlplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnl
vknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfg
gvsvitpgtntsnqvavlyqdvnctevpsnvfqtragcligaehvnnsyecdipigagic
asyqtqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicg
dstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsq
ilpdpskpskrsfiedllfnkvkfngltvlpplltdemiaqytsallagtitsgwtfgag
aalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslssalgklqdvvnq
naqalntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqlir
aaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqekn
fttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivn
ntvydplqpeld

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7dx0B (B:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqyikwpwyiwlgfiagliaivmvtimlccmtsccsclkgccscgscckfdedd
sepvlkgvklhytledykddddk

    Sequence, based on observed residues (ATOM records):
    >7dx0B (B:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhanpvlpfndgvyfasteksn
iirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvmesefrvyssannctf
eyvsknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtll
alhrsayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnf
rvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfk
cygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawns
nnldskvggnynylyrlplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnl
vknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfg
gvsvitpgtntsnqvavlyqdvnctevpsnvfqtragcligaehvnnsyecdipigagic
asyqtqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicg
dstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsq
ilpdpskpskrsfiedllfnkvkfngltvlpplltdemiaqytsallagtitsgwtfgag
aalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsalgklqdvvnqn
aqalntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqlira
aeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknf
ttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnn
tvydplqpeld

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7dx0C (C:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqyikwpwyiwlgfiagliaivmvtimlccmtsccsclkgccscgscckfdedd
sepvlkgvklhytledykddddk

    Sequence, based on observed residues (ATOM records):
    >7dx0C (C:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhanpvlpfndgvyfasteksn
iirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvmesefrvyssannctf
eyvsknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtll
alhrsayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnf
rvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfk
cygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawns
nnldskvggnynylyrlplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnl
vknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfg
gvsvitpgtntsnqvavlyqdvnctevpsnvfqtragcligaehvnnsyecdipigagic
asyqtqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicg
dstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsq
ilpdpskpskrsfiedllfnkvkfngltvlpplltdemiaqytsallagtitsgwtfgag
aalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsalgklqdvvnqn
aqalntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqlira
aeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknf
ttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnn
tvydplqpeld