PDB entry 7dqe

View 7dqe on RCSB PDB site
Description: Crystal structure of the ADP-bound mutant A(S23C)3B(N64C)3 complex from enterococcus hirae V-ATPase
Class: hydrolase
Keywords: V-ATPase, A3B3, asymmetric structure, HYDROLASE
Deposited on 2020-12-23, released 2021-12-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-12-29, with a file datestamp of 2021-12-24.
Experiment type: XRAY
Resolution: 2.69 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: V-type sodium ATPase catalytic subunit A
    Species: Enterococcus hirae (strain ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO 1258) [TaxId:768486]
    Gene: ntpA, EHR_08260
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q08636 (7-599)
      • expression tag (0-6)
      • engineered mutation (29)
  • Chain 'B':
    Compound: V-type sodium ATPase catalytic subunit A
    Species: Enterococcus hirae (strain ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO 1258) [TaxId:768486]
    Gene: ntpA, EHR_08260
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q08636 (7-599)
      • expression tag (0-6)
      • engineered mutation (29)
  • Chain 'C':
    Compound: V-type sodium ATPase catalytic subunit A
    Species: Enterococcus hirae (strain ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO 1258) [TaxId:768486]
    Gene: ntpA, EHR_08260
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q08636 (7-599)
      • expression tag (0-6)
      • engineered mutation (29)
  • Chain 'D':
    Compound: V-type sodium ATPase subunit B
    Species: Enterococcus hirae (strain ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO 1258) [TaxId:768486]
    Gene: ntpB, EHR_08265
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q08637 (7-464)
      • expression tag (0-6)
      • engineered mutation (70)
  • Chain 'E':
    Compound: V-type sodium ATPase subunit B
    Species: Enterococcus hirae (strain ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO 1258) [TaxId:768486]
    Gene: ntpB, EHR_08265
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q08637 (7-464)
      • expression tag (0-6)
      • engineered mutation (70)
    Domains in SCOPe 2.08: d7dqee1, d7dqee2, d7dqee3
  • Chain 'F':
    Compound: V-type sodium ATPase subunit B
    Species: Enterococcus hirae (strain ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO 1258) [TaxId:768486]
    Gene: ntpB, EHR_08265
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q08637 (7-464)
      • expression tag (0-6)
      • engineered mutation (70)
    Domains in SCOPe 2.08: d7dqef1, d7dqef2, d7dqef3
  • Heterogens: MG, ADP, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >7dqeE (E:)
gssgssgmikeyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkam
vqifegtsgiclknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekylding
evinpiardypdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvlds
sddfavvfaaigitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaae
ylayekgmhvlvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirg
lkgsvtqipiltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkd
kgtgagktredhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyv
nqgfytnrtitetldlgwellamlprtelkrikddlldkylpegk

    Sequence, based on observed residues (ATOM records): (download) 
    >7dqeE (E:)
mikeyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkamvqifegt
sgiclknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekyldingevinpia
rdypdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvldssddfavv
faaigitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaaeylayekg
mhvlvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirglkgsvtq
ipiltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkdkgtgagk
tredhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyvnqgfytn
rtitetldlgwellamlprtelkrikddlldkyl

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >7dqeF (F:)
gssgssgmikeyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkam
vqifegtsgiclknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekylding
evinpiardypdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvlds
sddfavvfaaigitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaae
ylayekgmhvlvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirg
lkgsvtqipiltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkd
kgtgagktredhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyv
nqgfytnrtitetldlgwellamlprtelkrikddlldkylpegk

    Sequence, based on observed residues (ATOM records): (download) 
    >7dqeF (F:)
mikeyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkamvqifegt
sgiclknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekyldingevinpia
rdypdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvldssddfavv
faaigitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaaeylayekg
mhvlvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirglkgsvtq
ipiltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkdkgtgagk
tredhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyvnqgfytn
rtitetldlgwellamlprtelkrikddlldkyl