PDB entry 7dq7

View 7dq7 on RCSB PDB site
Description: cryo-em structure of coxsackievirus b1 mature virion in complex with nab 5f5
Deposited on 2020-12-22, released 2021-05-05
The last revision was dated 2021-05-05, with a file datestamp of 2021-04-30.
Experiment type: EM
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Virion protein 1
    Species: Coxsackievirus B1 [TaxId:12071]
    Database cross-references and differences (RAF-indexed):
    • Uniprot W8GTF7 (Start-277)
      • variant (83)
  • Chain 'B':
    Compound: vp2
    Species: Coxsackievirus B1 [TaxId:12071]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: vp3
    Species: Coxsackievirus B1 [TaxId:12071]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: capsid protein VP4
    Species: Coxsackievirus B1 [TaxId:12071]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: 5f5 vh
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7DQ7 (0-122)
  • Chain 'L':
    Compound: 5f5 vl
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7DQ7 (0-105)
  • Heterogens: PLM

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7dq7A (A:)
gpveesvdravarvadtissrptnsesipaltaaetghtsqvvpsdtmqtrhvknyhsrs
essienflcrsacvyyatytnnskkgfaewvintrqvaqlrrklelftylrfdleltfvi
tsaqqpstassvdapvqthqimyvppggpvptkvkdyawqtstnpsvfwtegnapprmsi
pfisignayscfydgwtqfsrngvygintlnnmgtlymrhvneagqgpikstvriyfkpk
hvkawvprpprlcqyekqknvnfspigvttsrtdiitt

    Sequence, based on observed residues (ATOM records):
    >7dq7A (A:)
arvadtissrptnsesipaltaaetghtsqvvpsdtmqtrhvknyhsrsessienflcrs
acvyyatytnnskkgfaewvintrqvaqlrrklelftylrfdleltfvitsaqqpstass
vdapvqthqimyvppggpvptkvkdyawqtstnpsvfwtegnapprmsipfisignaysc
fydgwtqfsrngvygintlnnmgtlymrhvneagqgpikstvriyfkpkhvkawvprppr
lcqyekqknvnfspigvttsrtdiitt

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7dq7B (B:)
spsaeecgysdrvrsitlgnstittqecanvvvgygvwpeylkdneataedqptqpdvat
crfytlesvqwmknsagwwwklpdalsqmglfgqnmqyhylgrtgytihvqcnaskfhqg
cllvvcvpeaemgcsnlnntpefselsggdsarmftdtqvgesnakkvqtavwnagmgvg
vgnltifphqwinlrtnnsatlvmpyinsvpmdnmfrhnnltlmiipfvplnysegsspy
vpitvtiapmcaeynglrlasnq

    Sequence, based on observed residues (ATOM records):
    >7dq7B (B:)
sdrvrsitlgnstittqecanvvvgygvwpeylkdneataedqptqpdvatcrfytlesv
qwmknsagwwwklpdalsqmglfgqnmqyhylgrtgytihvqcnaskfhqgcllvvcvpe
aemgcsnlnntpefselsggdsarmftdtqvgesnakkvqtavwnagmgvgvgnltifph
qwinlrtnnsatlvmpyinsvpmdnmfrhnnltlmiipfvplnysegsspyvpitvtiap
mcaeynglrlas

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7dq7C (C:)
glpvmttpgstqfltsddfqspsampqfdvtpemqipgrvnnlmeiaevdsvvpvnnted
nvsslkayqipvqsnsdngkqvfgfplqpgannvlnrtllgeilnyythwsgsikltfmf
cgsamatgkfllaysppgagvpknrkdamlgthviwdvglqsscvlcvpwisqthyryvv
edeytaagyvtcwyqtnivvpadvqsscdilcfvsacndfsvrmlkdtpfirqdtfyq

    Sequence, based on observed residues (ATOM records):
    >7dq7C (C:)
glpvmttpgstqfltsddfqspsampqfdvtpemqipgrvnnlmeiaevdsvvpvnnted
nvsslkayqipvqsnsdngkqvfgfplqpgannvlnrtllgeilnyythwsgsikltfmf
cgsamatgkfllaysppgagvpknrkdamlgthviwdvglqsscvlcvpwisqthyryvv
edeytaagyvtcwyqtnivvpadvqsscdilcfvsacndfsvrmlkdtpfirqdtfy

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7dq7D (D:)
mgaqvstqktgahetglnasgnsvihytninyykdaasnsanrqdftqdpgkftepvkdi
mvktmpaln

    Sequence, based on observed residues (ATOM records):
    >7dq7D (D:)
aqvstqktgihytninyykdaasnsanrqdftqdpgkftepvkdimvktmpaln

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >7dq7H (H:)
eiqlqqsgpelvkpgasvkvsckasgysftdyniywvkqshgkslewigyvdpyngntny
nqkfkgkatltvdkssstafmhlnsltsevstvyycargggyygggyygmdywgqgtsvt
vss

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >7dq7L (L:)
qivlsqspailsaspgekvtmtcrasssvsylhwyqqkpgsspkpwisatsnlasgvpar
fsgsgsgtsysltisrveaedaatyycqqwssnplsfgggtklelk