PDB entry 7dq1

View 7dq1 on RCSB PDB site
Description: cryo-em structure of coxsackievirus b1 virion in complex with car at physiological temperature
Deposited on 2020-12-22, released 2021-05-05
The last revision was dated 2021-05-05, with a file datestamp of 2021-04-30.
Experiment type: EM
Resolution: 3.6 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: Virion protein 1
    Species: Coxsackievirus B1 [TaxId:12071]
    Database cross-references and differences (RAF-indexed):
    • Uniprot W8GTF7 (Start-277)
      • variant (83)
  • Chain '2':
    Compound: vp2
    Species: Coxsackievirus B1 [TaxId:12071]
    Database cross-references and differences (RAF-indexed):
  • Chain '3':
    Compound: vp3
    Species: Coxsackievirus B1 [TaxId:12071]
    Database cross-references and differences (RAF-indexed):
  • Chain '4':
    Compound: capsid protein VP4
    Species: Coxsackievirus B1 [TaxId:12071]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: coxsackievirus and adenovirus receptor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain '1':
    Sequence, based on SEQRES records:
    >7dq11 (1:)
gpveesvdravarvadtissrptnsesipaltaaetghtsqvvpsdtmqtrhvknyhsrs
essienflcrsacvyyatytnnskkgfaewvintrqvaqlrrklelftylrfdleltfvi
tsaqqpstassvdapvqthqimyvppggpvptkvkdyawqtstnpsvfwtegnapprmsi
pfisignayscfydgwtqfsrngvygintlnnmgtlymrhvneagqgpikstvriyfkpk
hvkawvprpprlcqyekqknvnfspigvttsrtdiitt

    Sequence, based on observed residues (ATOM records):
    >7dq11 (1:)
arvadtissrptnsesipaltaaetghtsqvvpsdtmqtrhvknyhsrsessienflcrs
acvyyatytnnskkgfaewvintrqvaqlrrklelftylrfdleltfvitsaqqpstass
vdapvqthqimyvppggpvptkvkdyawqtstnpsvfwtegnapprmsipfisignaysc
fydgwtqfsrngvygintlnnmgtlymrhvneagqgpikstvriyfkpkhvkawvprppr
lcqyekqknvnfspigvttsrtdiitt

  • Chain '2':
    Sequence, based on SEQRES records:
    >7dq12 (2:)
spsaeecgysdrvrsitlgnstittqecanvvvgygvwpeylkdneataedqptqpdvat
crfytlesvqwmknsagwwwklpdalsqmglfgqnmqyhylgrtgytihvqcnaskfhqg
cllvvcvpeaemgcsnlnntpefselsggdsarmftdtqvgesnakkvqtavwnagmgvg
vgnltifphqwinlrtnnsatlvmpyinsvpmdnmfrhnnltlmiipfvplnysegsspy
vpitvtiapmcaeynglrlasnq

    Sequence, based on observed residues (ATOM records):
    >7dq12 (2:)
sdrvrsitlgnstittqecanvvvgygvwpeylkdneataedqptqpdvatcrfytlesv
qwmknsagwwwklpdalsqmglfgqnmqyhylgrtgytihvqcnaskfhqgcllvvcvpe
aemgcsnlnntpefselsggdsarmftdtqvgesnakkvqtavwnagmgvgvgnltifph
qwinlrtnnsatlvmpyinsvpmdnmfrhnnltlmiipfvplnysegsspyvpitvtiap
mcaeynglrlas

  • Chain '3':
    Sequence, based on SEQRES records:
    >7dq13 (3:)
glpvmttpgstqfltsddfqspsampqfdvtpemqipgrvnnlmeiaevdsvvpvnnted
nvsslkayqipvqsnsdngkqvfgfplqpgannvlnrtllgeilnyythwsgsikltfmf
cgsamatgkfllaysppgagvpknrkdamlgthviwdvglqsscvlcvpwisqthyryvv
edeytaagyvtcwyqtnivvpadvqsscdilcfvsacndfsvrmlkdtpfirqdtfyq

    Sequence, based on observed residues (ATOM records):
    >7dq13 (3:)
glpvmttpgstqfltsddfqspsampqfdvtpemqipgrvnnlmeiaevdsvvpvnnted
nvsslkayqipvqsnsdngkqvfgfplqpgannvlnrtllgeilnyythwsgsikltfmf
cgsamatgkfllaysppgagvpknrkdamlgthviwdvglqsscvlcvpwisqthyryvv
edeytaagyvtcwyqtnivvpadvqsscdilcfvsacndfsvrmlkdtpfirqdtfy

  • Chain '4':
    Sequence, based on SEQRES records:
    >7dq14 (4:)
mgaqvstqktgahetglnasgnsvihytninyykdaasnsanrqdftqdpgkftepvkdi
mvktmpaln

    Sequence, based on observed residues (ATOM records):
    >7dq14 (4:)
qvstqkihytninyykdaasnsanrqdftqdpgkftepvkdimvktmpal

  • Chain 'K':
    Sequence, based on SEQRES records:
    >7dq1K (K:)
lsittpeemiekakgetaylpckftlspedqgpldiewlispadnqkvdqviilysgdki
yddyypdlkgrvhftsndlksgdasinvtnlqlsdigtyqckvkkapgvankkihlvvlv
k

    Sequence, based on observed residues (ATOM records):
    >7dq1K (K:)
lsittpeemiekakgetaylpckftlspedqgpldiewlispdqviilysgdkiyddyyp
dlkgrvhftsndlksgdasinvtnlqlsdigtyqckvkkapgvankkihlvv