PDB entry 7do6

View 7do6 on RCSB PDB site
Description: Crystal structure of Azotobacter vinelandii L-rhamnose 1-dehydrogenase(NADP bound-form)
Class: oxidoreductase
Keywords: L-Rhamnose metabolism, NADP-dependent dehydrogenase, SDR protein family, oxidoreductase
Deposited on 2020-12-12, released 2021-02-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-03-24, with a file datestamp of 2021-03-19.
Experiment type: XRAY
Resolution: 2.37 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Short-chain dehydrogenase/reductase SDR
    Species: Azotobacter vinelandii (strain DJ / ATCC BAA-1303) [TaxId:322710]
    Gene: Avin_09160
    Database cross-references and differences (RAF-indexed):
    • Uniprot C1DMX5 (12-266)
      • expression tag (11)
    Domains in SCOPe 2.08: d7do6a1, d7do6a2
  • Chain 'B':
    Compound: Short-chain dehydrogenase/reductase SDR
    Species: Azotobacter vinelandii (strain DJ / ATCC BAA-1303) [TaxId:322710]
    Gene: Avin_09160
    Database cross-references and differences (RAF-indexed):
    • Uniprot C1DMX5 (12-266)
      • expression tag (11)
    Domains in SCOPe 2.08: d7do6b1, d7do6b2
  • Chain 'C':
    Compound: Short-chain dehydrogenase/reductase SDR
    Species: Azotobacter vinelandii (strain DJ / ATCC BAA-1303) [TaxId:322710]
    Gene: Avin_09160
    Database cross-references and differences (RAF-indexed):
    • Uniprot C1DMX5 (12-266)
      • expression tag (11)
    Domains in SCOPe 2.08: d7do6c1, d7do6c2
  • Chain 'D':
    Compound: Short-chain dehydrogenase/reductase SDR
    Species: Azotobacter vinelandii (strain DJ / ATCC BAA-1303) [TaxId:322710]
    Gene: Avin_09160
    Database cross-references and differences (RAF-indexed):
    • Uniprot C1DMX5 (12-266)
      • expression tag (11)
    Domains in SCOPe 2.08: d7do6d1, d7do6d2
  • Chain 'E':
    Compound: Short-chain dehydrogenase/reductase SDR
    Species: Azotobacter vinelandii (strain DJ / ATCC BAA-1303) [TaxId:322710]
    Gene: Avin_09160
    Database cross-references and differences (RAF-indexed):
    • Uniprot C1DMX5 (12-266)
      • expression tag (11)
    Domains in SCOPe 2.08: d7do6e1, d7do6e2
  • Chain 'F':
    Compound: Short-chain dehydrogenase/reductase SDR
    Species: Azotobacter vinelandii (strain DJ / ATCC BAA-1303) [TaxId:322710]
    Gene: Avin_09160
    Database cross-references and differences (RAF-indexed):
    • Uniprot C1DMX5 (12-266)
      • expression tag (11)
    Domains in SCOPe 2.08: d7do6f1, d7do6f2
  • Chain 'G':
    Compound: Short-chain dehydrogenase/reductase SDR
    Species: Azotobacter vinelandii (strain DJ / ATCC BAA-1303) [TaxId:322710]
    Gene: Avin_09160
    Database cross-references and differences (RAF-indexed):
    • Uniprot C1DMX5 (12-266)
      • expression tag (11)
    Domains in SCOPe 2.08: d7do6g1, d7do6g2
  • Chain 'H':
    Compound: Short-chain dehydrogenase/reductase SDR
    Species: Azotobacter vinelandii (strain DJ / ATCC BAA-1303) [TaxId:322710]
    Gene: Avin_09160
    Database cross-references and differences (RAF-indexed):
    • Uniprot C1DMX5 (12-266)
      • expression tag (11)
    Domains in SCOPe 2.08: d7do6h1, d7do6h2
  • Heterogens: NAP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7do6A (A:)
mrgshhhhhhgsllidktvivtgasrgigraaarecarqgarvvighsgsdegragalsl
aeeiaafggtaiavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprel
ylktvgtnlngayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllsl
mqscaialgpygircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpi
vflasdmaryvtgasllvdgglfvnlq

    Sequence, based on observed residues (ATOM records): (download) 
    >7do6A (A:)
sllidktvivtgasrgigraaarecarqgarvvighsgsdegragalslaeeiaafggta
iavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprelylktvgtnlng
ayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllslmqscaialgpy
gircnavlpgtiadlekrermtsrvplgrlgepddlagpivflasdmaryvtgasllvdg
glfvnlq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7do6B (B:)
mrgshhhhhhgsllidktvivtgasrgigraaarecarqgarvvighsgsdegragalsl
aeeiaafggtaiavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprel
ylktvgtnlngayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllsl
mqscaialgpygircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpi
vflasdmaryvtgasllvdgglfvnlq

    Sequence, based on observed residues (ATOM records): (download) 
    >7do6B (B:)
sllidktvivtgasrgigraaarecarqgarvvighsgsdegragalslaeeiaafggta
iavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprelylktvgtnlng
ayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllslmqscaialgpy
gircnavlpgtiatlekrermtsrvplgrlgepddlagpivflasdmaryvtgasllvdg
glfvnlq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7do6C (C:)
mrgshhhhhhgsllidktvivtgasrgigraaarecarqgarvvighsgsdegragalsl
aeeiaafggtaiavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprel
ylktvgtnlngayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllsl
mqscaialgpygircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpi
vflasdmaryvtgasllvdgglfvnlq

    Sequence, based on observed residues (ATOM records): (download) 
    >7do6C (C:)
sllidktvivtgasrgigraaarecarqgarvvighsgsdegragalslaeeiaafggta
iavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprelylktvgtnlng
ayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllslmqscaialgpy
gircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpivflasdmaryv
tgasllvdgglfvnlq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7do6D (D:)
mrgshhhhhhgsllidktvivtgasrgigraaarecarqgarvvighsgsdegragalsl
aeeiaafggtaiavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprel
ylktvgtnlngayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllsl
mqscaialgpygircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpi
vflasdmaryvtgasllvdgglfvnlq

    Sequence, based on observed residues (ATOM records): (download) 
    >7do6D (D:)
sllidktvivtgasrgigraaarecarqgarvvighsgsdegragalslaeeiaafggta
iavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprelylktvgtnlng
ayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllslmqscaialgpy
gircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpivflasdmaryv
tgasllvdgglfvnlq

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >7do6E (E:)
mrgshhhhhhgsllidktvivtgasrgigraaarecarqgarvvighsgsdegragalsl
aeeiaafggtaiavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprel
ylktvgtnlngayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllsl
mqscaialgpygircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpi
vflasdmaryvtgasllvdgglfvnlq

    Sequence, based on observed residues (ATOM records): (download) 
    >7do6E (E:)
sllidktvivtgasrgigraaarecarqgarvvighsgsdegragalslaeeiaafggta
iavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprelylktvgtnlng
ayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllslmqscaialgpy
gircnavlpgtiadlekrermtsrvplgrlgepddlagpivflasdmaryvtgasllvdg
glfvnlq

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >7do6F (F:)
mrgshhhhhhgsllidktvivtgasrgigraaarecarqgarvvighsgsdegragalsl
aeeiaafggtaiavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprel
ylktvgtnlngayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllsl
mqscaialgpygircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpi
vflasdmaryvtgasllvdgglfvnlq

    Sequence, based on observed residues (ATOM records): (download) 
    >7do6F (F:)
sllidktvivtgasrgigraaarecarqgarvvighsgsdegragalslaeeiaafggta
iavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprelylktvgtnlng
ayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllslmqscaialgpy
gircnavlpgtialekrermtsrvplgrlgepddlagpivflasdmaryvtgasllvdgg
lfvnlq

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >7do6G (G:)
mrgshhhhhhgsllidktvivtgasrgigraaarecarqgarvvighsgsdegragalsl
aeeiaafggtaiavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprel
ylktvgtnlngayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllsl
mqscaialgpygircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpi
vflasdmaryvtgasllvdgglfvnlq

    Sequence, based on observed residues (ATOM records): (download) 
    >7do6G (G:)
sllidktvivtgasrgigraaarecarqgarvvighsgsdegragalslaeeiaafggta
iavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprelylktvgtnlng
ayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllslmqscaialgpy
gircnavlpgtiatdlekrermtsrvplgrlgepddlagpivflasdmaryvtgasllvd
gglfvnlq

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >7do6H (H:)
mrgshhhhhhgsllidktvivtgasrgigraaarecarqgarvvighsgsdegragalsl
aeeiaafggtaiavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprel
ylktvgtnlngayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllsl
mqscaialgpygircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpi
vflasdmaryvtgasllvdgglfvnlq

    Sequence, based on observed residues (ATOM records): (download) 
    >7do6H (H:)
sllidktvivtgasrgigraaarecarqgarvvighsgsdegragalslaeeiaafggta
iavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprelylktvgtnlng
ayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllslmqscaialgpy
gircnavlpgtiadlekrermtsrvplgrlgepddlagpivflasdmaryvtgasllvdg
glfvnlq