PDB entry 7do5

View 7do5 on RCSB PDB site
Description: Crystal structure of Azotobacter vinelandii L-rhamnose 1-dehydrogenase(apo-form)
Class: oxidoreductase
Keywords: L-Rhamnose metabolism, NADP-dependentdehydrogenase, SDR protein family, oxidoreductase
Deposited on 2020-12-12, released 2021-02-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-03-24, with a file datestamp of 2021-03-19.
Experiment type: XRAY
Resolution: 1.84 Å
R-factor: N/A
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Short-chain dehydrogenase/reductase SDR
    Species: Azotobacter vinelandii (strain DJ / ATCC BAA-1303) [TaxId:322710]
    Gene: Avin_09160
    Database cross-references and differences (RAF-indexed):
    • Uniprot C1DMX5 (12-266)
      • expression tag (11)
    Domains in SCOPe 2.08: d7do5a1, d7do5a2
  • Chain 'B':
    Compound: Short-chain dehydrogenase/reductase SDR
    Species: Azotobacter vinelandii (strain DJ / ATCC BAA-1303) [TaxId:322710]
    Gene: Avin_09160
    Database cross-references and differences (RAF-indexed):
    • Uniprot C1DMX5 (12-266)
      • expression tag (6-11)
    Domains in SCOPe 2.08: d7do5b1, d7do5b2
  • Chain 'C':
    Compound: Short-chain dehydrogenase/reductase SDR
    Species: Azotobacter vinelandii (strain DJ / ATCC BAA-1303) [TaxId:322710]
    Gene: Avin_09160
    Database cross-references and differences (RAF-indexed):
    • Uniprot C1DMX5 (12-266)
      • expression tag (11)
    Domains in SCOPe 2.08: d7do5c1, d7do5c2
  • Chain 'D':
    Compound: Short-chain dehydrogenase/reductase SDR
    Species: Azotobacter vinelandii (strain DJ / ATCC BAA-1303) [TaxId:322710]
    Gene: Avin_09160
    Database cross-references and differences (RAF-indexed):
    • Uniprot C1DMX5 (12-266)
      • expression tag (10-11)
    Domains in SCOPe 2.08: d7do5d1, d7do5d2
  • Chain 'E':
    Compound: Short-chain dehydrogenase/reductase SDR
    Species: Azotobacter vinelandii (strain DJ / ATCC BAA-1303) [TaxId:322710]
    Gene: Avin_09160
    Database cross-references and differences (RAF-indexed):
    • Uniprot C1DMX5 (12-266)
      • expression tag (10-11)
    Domains in SCOPe 2.08: d7do5e1, d7do5e2
  • Chain 'F':
    Compound: Short-chain dehydrogenase/reductase SDR
    Species: Azotobacter vinelandii (strain DJ / ATCC BAA-1303) [TaxId:322710]
    Gene: Avin_09160
    Database cross-references and differences (RAF-indexed):
    • Uniprot C1DMX5 (12-266)
      • expression tag (10-11)
    Domains in SCOPe 2.08: d7do5f1, d7do5f2
  • Chain 'G':
    Compound: Short-chain dehydrogenase/reductase SDR
    Species: Azotobacter vinelandii (strain DJ / ATCC BAA-1303) [TaxId:322710]
    Gene: Avin_09160
    Database cross-references and differences (RAF-indexed):
    • Uniprot C1DMX5 (12-266)
      • expression tag (1-11)
    Domains in SCOPe 2.08: d7do5g1, d7do5g2
  • Chain 'H':
    Compound: Short-chain dehydrogenase/reductase SDR
    Species: Azotobacter vinelandii (strain DJ / ATCC BAA-1303) [TaxId:322710]
    Gene: Avin_09160
    Database cross-references and differences (RAF-indexed):
    • Uniprot C1DMX5 (12-266)
      • expression tag (9-11)
    Domains in SCOPe 2.08: d7do5h1, d7do5h2
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7do5A (A:)
mrgshhhhhhgsllidktvivtgasrgigraaarecarqgarvvighsgsdegragalsl
aeeiaafggtaiavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprel
ylktvgtnlngayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllsl
mqscaialgpygircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpi
vflasdmaryvtgasllvdgglfvnlq

    Sequence, based on observed residues (ATOM records): (download) 
    >7do5A (A:)
sllidktvivtgasrgigraaarecarqgarvvighsgsdegragalslaeeiaafggta
iavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprelylktvgtnlng
ayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllslmqscaialgpy
gircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpivflasdmaryv
tgasllvdgglfvnlq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7do5B (B:)
mrgshhhhhhgsllidktvivtgasrgigraaarecarqgarvvighsgsdegragalsl
aeeiaafggtaiavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprel
ylktvgtnlngayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllsl
mqscaialgpygircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpi
vflasdmaryvtgasllvdgglfvnlq

    Sequence, based on observed residues (ATOM records): (download) 
    >7do5B (B:)
hhhhgsllidktvivtgasrgigraaarecarqgarvvighsgsdegragalslaeeiaa
fggtaiavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprelylktvg
tnlngayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllslmqscai
algpygircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpivflasd
maryvtgasllvdgglfvnlq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7do5C (C:)
mrgshhhhhhgsllidktvivtgasrgigraaarecarqgarvvighsgsdegragalsl
aeeiaafggtaiavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprel
ylktvgtnlngayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllsl
mqscaialgpygircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpi
vflasdmaryvtgasllvdgglfvnlq

    Sequence, based on observed residues (ATOM records): (download) 
    >7do5C (C:)
sllidktvivtgasrgigraaarecarqgarvvighsgsdegragalslaeeiaafggta
iavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprelylktvgtnlng
ayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllslmqscaialgpy
gircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpivflasdmaryv
tgasllvdgglfvnlq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7do5D (D:)
mrgshhhhhhgsllidktvivtgasrgigraaarecarqgarvvighsgsdegragalsl
aeeiaafggtaiavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprel
ylktvgtnlngayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllsl
mqscaialgpygircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpi
vflasdmaryvtgasllvdgglfvnlq

    Sequence, based on observed residues (ATOM records): (download) 
    >7do5D (D:)
gsllidktvivtgasrgigraaarecarqgarvvighsgsdegragalslaeeiaafggt
aiavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprelylktvgtnln
gayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllslmqscaialgp
ygircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpivflasdmary
vtgasllvdgglfvnlq

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >7do5E (E:)
mrgshhhhhhgsllidktvivtgasrgigraaarecarqgarvvighsgsdegragalsl
aeeiaafggtaiavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprel
ylktvgtnlngayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllsl
mqscaialgpygircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpi
vflasdmaryvtgasllvdgglfvnlq

    Sequence, based on observed residues (ATOM records): (download) 
    >7do5E (E:)
gsllidktvivtgasrgigraaarecarqgarvvighsgsdegragalslaeeiaafggt
aiavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprelylktvgtnln
gayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllslmqscaialgp
ygircnavlpgtiadlekrermtsrvplgrlgepddlagpivflasdmaryvtgasllvd
gglfvnlq

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >7do5F (F:)
mrgshhhhhhgsllidktvivtgasrgigraaarecarqgarvvighsgsdegragalsl
aeeiaafggtaiavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprel
ylktvgtnlngayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllsl
mqscaialgpygircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpi
vflasdmaryvtgasllvdgglfvnlq

    Sequence, based on observed residues (ATOM records): (download) 
    >7do5F (F:)
gsllidktvivtgasrgigraaarecarqgarvvighsgsdegragalslaeeiaafggt
aiavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprelylktvgtnln
gayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllslmqscaialgp
ygircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpivflasdmary
vtgasllvdgglfvnlq

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >7do5G (G:)
mrgshhhhhhgsllidktvivtgasrgigraaarecarqgarvvighsgsdegragalsl
aeeiaafggtaiavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprel
ylktvgtnlngayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllsl
mqscaialgpygircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpi
vflasdmaryvtgasllvdgglfvnlq

    Sequence, based on observed residues (ATOM records): (download) 
    >7do5G (G:)
rgshhhhhhgsllidktvivtgasrgigraaarecarqgarvvighsgsdegragalsla
eeiaafggtaiavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprely
lktvgtnlngayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllslm
qscaialgpygircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpiv
flasdmaryvtgasllvdgglfvnlq

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >7do5H (H:)
mrgshhhhhhgsllidktvivtgasrgigraaarecarqgarvvighsgsdegragalsl
aeeiaafggtaiavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprel
ylktvgtnlngayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllsl
mqscaialgpygircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpi
vflasdmaryvtgasllvdgglfvnlq

    Sequence, based on observed residues (ATOM records): (download) 
    >7do5H (H:)
hgsllidktvivtgasrgigraaarecarqgarvvighsgsdegragalslaeeiaafgg
taiavgadaadldsgeklvaaaveafgsvdvlvnnagicpfhsfldmprelylktvgtnl
ngayftvqaaarrmkeqgrggaiiavssisalvggamqthytptkagllslmqscaialg
pygircnavlpgtiatdinkedlsdlekrermtsrvplgrlgepddlagpivflasdmar
yvtgasllvdgglfvnlq