PDB entry 7df3

View 7df3 on RCSB PDB site
Description: sars-cov-2 s trimer, s-closed
Deposited on 2020-11-06, released 2020-12-16
The last revision was dated 2021-02-17, with a file datestamp of 2021-02-12.
Experiment type: EM
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • engineered mutation (985-986)
  • Chain 'B':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • engineered mutation (985-986)
  • Chain 'C':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • engineered mutation (985-986)
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7df3A (A:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnspgsassvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqgsgyipeaprdgqayvrkdgewvllstflenlyfqgdykddddkhhhhhhhh
h

    Sequence, based on observed residues (ATOM records):
    >7df3A (A:)
qcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihkrfd
npvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpf
lgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfknidgy
fkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsssgwtagaaayyv
gylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesiv
rfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptkl
ndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvgg
nynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqp
yrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgr
diadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnctevnvfqtra
gcligaehvnnsyecdipigagicasyqtsqsiiaytmslgaensvaysnnsiaiptnft
isvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntq
evfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygd
clgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfa
mqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqal
ntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeir
asanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttap
aichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvyd
plqpelds

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7df3B (B:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnspgsassvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqgsgyipeaprdgqayvrkdgewvllstflenlyfqgdykddddkhhhhhhhh
h

    Sequence, based on observed residues (ATOM records):
    >7df3B (B:)
qcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihkrfd
npvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpf
lgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfknidgy
fkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsssgwtagaaayyv
gylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesiv
rfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptkl
ndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvgg
nynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqp
yrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgr
diadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnctevnvfqtra
gcligaehvnnsyecdipigagicasyqtsqsiiaytmslgaensvaysnnsiaiptnft
isvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntq
evfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygd
clgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfa
mqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqal
ntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeir
asanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttap
aichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvyd
plqpelds

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7df3C (C:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnspgsassvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqgsgyipeaprdgqayvrkdgewvllstflenlyfqgdykddddkhhhhhhhh
h

    Sequence, based on observed residues (ATOM records):
    >7df3C (C:)
qcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihkrfd
npvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpf
lgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfknidgy
fkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsssgwtagaaayyv
gylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesiv
rfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptkl
ndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvgg
nynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqp
yrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgr
diadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnctevnvfqtra
gcligaehvnnsyecdipigagicasyqtsqsiiaytmslgaensvaysnnsiaiptnft
isvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntq
evfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygd
clgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfa
mqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqal
ntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeir
asanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttap
aichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvyd
plqpelds