PDB entry 7deu

View 7deu on RCSB PDB site
Description: Crystal structure of SARS-CoV-2 RBD in complex with a neutralizing antibody scFv
Class: viral protein/antiviral protein
Keywords: SARS-CoV-2, RBD, antibody, VIRAL PROTEIN, ANTIVIRAL PROTEIN, VIRAL PROTEIN-ANTIVIRAL PROTEIN complex
Deposited on 2020-11-05, released 2021-03-31
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-05-26, with a file datestamp of 2021-05-21.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spike protein S1
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7deua_
  • Chain 'B':
    Compound: antibody scFv
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7DEU (0-End)
    Domains in SCOPe 2.08: d7deub1, d7deub2, d7deub3
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7deuA (A:)
nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcft
nvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyly
rlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvl
sfellhapatvcgpkksaaahhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7deuA (A:)
nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcft
nvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyly
rlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvl
sfellhapatvcgp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7deuB (B:)
evqlqqsgpelvkpgasvkiscktsgytfteytmhwvkqshgkslewigginpnngdnty
nqklkgkatltvhkssstaymelrsltsedsavyycardgypyyyaldywgqgtsvtvss
ggggsggggsggggsdivmtqsqkfmstsvgdrvsvtckasqnvgtnvawyqqkpgqspk
pliysassrysgvpdrftgsgsgtdftltisnvqsedlaeyfcqqynnypwtfgggtkle
ikaaahhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7deuB (B:)
evqlqqsgpelvkpgasvkiscktsgytfteytmhwvkqshgkslewigginpnngdnty
nqklkgkatltvhkssstaymelrsltsedsavyycardgypyyyaldywgqgtsvtvgg
ggsdivmtqsqkfmstsvgdrvsvtckasqnvgtnvawyqqkpgqspkpliysassrysg
vpdrftgsgsgtdftltisnvqsedlaeyfcqqynnypwtfgggtkleika