SCOPe 2.08: Structural Classification of Proteins

PDB entry 7dde

View 7dde on RCSB PDB site
Description: cryo-em structure of the ape4 and nbr1 complex
Deposited on 2020-10-28, released 2021-07-14
The last revision was dated 2021-08-11, with a file datestamp of 2021-08-06.
Experiment type: EM
Resolution: 2.26 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Aspartyl aminopeptidase 1,ZZ-type zinc finger-containing protein P35G2.11c,Maltose/maltodextrin-binding periplasmic protein
Species: Escherichia coli (strain K12) [TaxId:83333]
Gene: malE, b4034, JW3994
Database cross-references and differences (RAF-indexed):
- Uniprot O36014 (6-472)
  - initiating methionine (0)
  - expression tag (1-5)
  - linker (473-485)
- Uniprot Q9P792 (486-562)
- Uniprot P0AEX9 (563-928)
Chain 'C':
Compound: Aspartyl aminopeptidase 1,ZZ-type zinc finger-containing protein P35G2.11c,Maltose/maltodextrin-binding periplasmic protein
Species: Escherichia coli (strain K12) [TaxId:83333]
Gene: malE, b4034, JW3994
Database cross-references and differences (RAF-indexed):
- Uniprot O36014 (6-472)
  - initiating methionine (0)
  - expression tag (1-5)
  - linker (473-485)
- Uniprot Q9P792 (486-562)
- Uniprot P0AEX9 (563-928)
Chain 'E':
Compound: Aspartyl aminopeptidase 1,ZZ-type zinc finger-containing protein P35G2.11c,Maltose/maltodextrin-binding periplasmic protein
Species: Escherichia coli (strain K12) [TaxId:83333]
Gene: malE, b4034, JW3994
Database cross-references and differences (RAF-indexed):
- Uniprot O36014 (6-472)
  - initiating methionine (0)
  - expression tag (1-5)
  - linker (473-485)
- Uniprot Q9P792 (486-562)
- Uniprot P0AEX9 (563-928)
Chain 'G':
Compound: Aspartyl aminopeptidase 1,ZZ-type zinc finger-containing protein P35G2.11c,Maltose/maltodextrin-binding periplasmic protein
Species: Escherichia coli (strain K12) [TaxId:83333]
Gene: malE, b4034, JW3994
Database cross-references and differences (RAF-indexed):
- Uniprot O36014 (6-472)
  - initiating methionine (0)
  - expression tag (1-5)
  - linker (473-485)
- Uniprot Q9P792 (486-562)
- Uniprot P0AEX9 (563-928)
Chain 'I':
Compound: Aspartyl aminopeptidase 1,ZZ-type zinc finger-containing protein P35G2.11c,Maltose/maltodextrin-binding periplasmic protein
Species: Escherichia coli (strain K12) [TaxId:83333]
Gene: malE, b4034, JW3994
Database cross-references and differences (RAF-indexed):
- Uniprot O36014 (6-472)
  - initiating methionine (0)
  - expression tag (1-5)
  - linker (473-485)
- Uniprot Q9P792 (486-562)
- Uniprot P0AEX9 (563-928)
Chain 'K':
Compound: Aspartyl aminopeptidase 1,ZZ-type zinc finger-containing protein P35G2.11c,Maltose/maltodextrin-binding periplasmic protein
Species: Escherichia coli (strain K12) [TaxId:83333]
Gene: malE, b4034, JW3994
Database cross-references and differences (RAF-indexed):
- Uniprot O36014 (6-472)
  - initiating methionine (0)
  - expression tag (1-5)
  - linker (473-485)
- Uniprot Q9P792 (486-562)
- Uniprot P0AEX9 (563-928)
Chain 'M':
Compound: Aspartyl aminopeptidase 1,ZZ-type zinc finger-containing protein P35G2.11c,Maltose/maltodextrin-binding periplasmic protein
Species: Escherichia coli (strain K12) [TaxId:83333]
Gene: malE, b4034, JW3994
Database cross-references and differences (RAF-indexed):
- Uniprot O36014 (6-472)
  - initiating methionine (0)
  - expression tag (1-5)
  - linker (473-485)
- Uniprot Q9P792 (486-562)
- Uniprot P0AEX9 (563-928)
Chain 'O':
Compound: Aspartyl aminopeptidase 1,ZZ-type zinc finger-containing protein P35G2.11c,Maltose/maltodextrin-binding periplasmic protein
Species: Escherichia coli (strain K12) [TaxId:83333]
Gene: malE, b4034, JW3994
Database cross-references and differences (RAF-indexed):
- Uniprot O36014 (6-472)
  - initiating methionine (0)
  - expression tag (1-5)
  - linker (473-485)
- Uniprot Q9P792 (486-562)
- Uniprot P0AEX9 (563-928)
Chain 'Q':
Compound: Aspartyl aminopeptidase 1,ZZ-type zinc finger-containing protein P35G2.11c,Maltose/maltodextrin-binding periplasmic protein
Species: Escherichia coli (strain K12) [TaxId:83333]
Gene: malE, b4034, JW3994
Database cross-references and differences (RAF-indexed):
- Uniprot O36014 (6-472)
  - initiating methionine (0)
  - expression tag (1-5)
  - linker (473-485)
- Uniprot Q9P792 (486-562)
- Uniprot P0AEX9 (563-928)
Chain 'S':
Compound: Aspartyl aminopeptidase 1,ZZ-type zinc finger-containing protein P35G2.11c,Maltose/maltodextrin-binding periplasmic protein
Species: Escherichia coli (strain K12) [TaxId:83333]
Gene: malE, b4034, JW3994
Database cross-references and differences (RAF-indexed):
- Uniprot O36014 (6-472)
  - initiating methionine (0)
  - expression tag (1-5)
  - linker (473-485)
- Uniprot Q9P792 (486-562)
- Uniprot P0AEX9 (563-928)
Chain 'V':
Compound: Aspartyl aminopeptidase 1,ZZ-type zinc finger-containing protein P35G2.11c,Maltose/maltodextrin-binding periplasmic protein
Species: Escherichia coli (strain K12) [TaxId:83333]
Gene: malE, b4034, JW3994
Database cross-references and differences (RAF-indexed):
- Uniprot O36014 (6-472)
  - initiating methionine (0)
  - expression tag (1-5)
  - linker (473-485)
- Uniprot Q9P792 (486-562)
- Uniprot P0AEX9 (563-928)
Chain 'X':
Compound: Aspartyl aminopeptidase 1,ZZ-type zinc finger-containing protein P35G2.11c,Maltose/maltodextrin-binding periplasmic protein
Species: Escherichia coli (strain K12) [TaxId:83333]
Gene: malE, b4034, JW3994
Database cross-references and differences (RAF-indexed):
- Uniprot O36014 (6-472)
  - initiating methionine (0)
  - expression tag (1-5)
  - linker (473-485)
- Uniprot Q9P792 (486-562)
- Uniprot P0AEX9 (563-928)
Heterogens: ZN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

Chain 'A':
Sequence, based on SEQRES records:

>7ddeA (A:)
mqlhgkmtatakscaldfldfvnasptpyhavqnlaehymshgfqylseksdwqskiepg
nsyfvtrnkssiiafsigkkwkpgngfsiiathtdsptlrlkpksqksaygylqvgveky
gggiwhtwfdrdlslagrvmveeedgrviqynvhidrpllriptlaihldpsanssfsfn
metefvpliglenelakeetsdngdkyhhpvllsllaneiskslettidpskivdfelil
gdaekarlggiheefvfsprldnlgmtfcasqaltkslennsldnescvrvvpsfdheei
gsvsaqgaestflpavlqricelgkesslfsismvksflvsadmahamhpnyssryensn
tpflnkgtvikvnanqryttnsagivllkkvaqladvpiqsfvvrndspcgstigpklaa
mtgmrtldlgnpmlsmhscremcgskdfeyavvlfssffqnfanleekiiidegfkkass
sdnkeqptlrsssvacntclkiirndsfhctkcfdfdvcrdcyakqaflhpcpkphfvlv
rssipsvasltcsvnsmsvspqskieegklviwingdkgynglaevgkkfekdtgikvtv
ehpdkleekfpqvaatgdgpdiifwahdrfggyaqsgllaeitpdkafqdklypftwdav
ryngkliaypiavealsliynkdllpnppktweeipaldkelkakgksalmfnlqepyft
wpliaadggyafkyengkydikdvgvdnagakagltflvdliknkhmnadtdysiaeaaf
nkgetamtingpwawsnidtskvnygvtvlptfkgqpskpfvgvlsaginaaspnkelak
eflenylltdegleavnkdkplgavalksyeeelakdpriaatmenaqkgeimpnipqms
afwyavrtavinaasgrqtvdealkdaqt