PDB entry 7dc6

View 7dc6 on RCSB PDB site
Description: Giant panda MHC class I complexes
Class: immune system
Keywords: Giant panda, MHC class I, Aime-128, IMMUNE SYSTEM
Deposited on 2020-10-23, released 2021-06-16
The last revision prior to the SCOPe 2.07 freeze date was dated 2021-06-16, with a file datestamp of 2021-06-11.
Experiment type: XRAY
Resolution: 2.68 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MHC class I antigen
    Species: Ailuropoda melanoleuca [TaxId:9646]
    Gene: Aime-128
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7dc6a1, d7dc6a2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Ailuropoda melanoleuca [TaxId:9646]
    Gene: B2M, PANDA_000996
    Database cross-references and differences (RAF-indexed):
    • Uniprot D2GW37 (5-94)
      • initiating methionine (0)
      • expression tag (1-4)
      • expression tag (95-98)
    Domains in SCOPe 2.07: d7dc6b1, d7dc6b2
  • Chain 'C':
    Compound: MHC class I antigen
    Species: Ailuropoda melanoleuca [TaxId:9646]
    Gene: Aime-128
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7dc6c1, d7dc6c2
  • Chain 'D':
    Compound: Beta-2-microglobulin
    Species: Ailuropoda melanoleuca [TaxId:9646]
    Gene: B2M, PANDA_000996
    Database cross-references and differences (RAF-indexed):
    • Uniprot D2GW37 (5-94)
      • expression tag (1-4)
      • expression tag (95-98)
    Domains in SCOPe 2.07: d7dc6d1, d7dc6d2, d7dc6d3
  • Chain 'E':
    Compound: CCV-NGY9 peptide from Spike protein
    Species: Canine coronavirus [TaxId:11153]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: CCV-NGY9 peptide from Spike protein
    Species: Canine coronavirus [TaxId:11153]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7dc6A (A:)
gshsmryfytavsrpgrgeprfiavgyvddtqfvrfdsdsasrrmeprapwieqegpeyw
drntriaednaqafrvdlqtalryynqseagshtiqwmhgcdvgpdgrllrgysqlaydg
adyialnedlrswtaadtaaqitrrkweaageaeryrnyvegecvewlrrylengketlq
raetpdtrvtrhpisdqkvtlrcwalgfypaeitltwqqdgedltqdtelvetrpagdgt
fqkwaavvvpsgqeqrytchvqheglpepltrswe

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7dc6B (B:)
mvqhapkiqvysrhpaengkpnflncyvsgfhppeieidllkngekmkaeqsdlsfskdw
tfyllvhteftpngqdefscrvkhvtlsepqiikwerdn

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7dc6C (C:)
gshsmryfytavsrpgrgeprfiavgyvddtqfvrfdsdsasrrmeprapwieqegpeyw
drntriaednaqafrvdlqtalryynqseagshtiqwmhgcdvgpdgrllrgysqlaydg
adyialnedlrswtaadtaaqitrrkweaageaeryrnyvegecvewlrrylengketlq
raetpdtrvtrhpisdqkvtlrcwalgfypaeitltwqqdgedltqdtelvetrpagdgt
fqkwaavvvpsgqeqrytchvqheglpepltrswe

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7dc6D (D:)
mvqhapkiqvysrhpaengkpnflncyvsgfhppeieidllkngekmkaeqsdlsfskdw
tfyllvhteftpngqdefscrvkhvtlsepqiikwerdn

    Sequence, based on observed residues (ATOM records): (download) 
    >7dc6D (D:)
vqhapkiqvysrhpaengkpnflncyvsgfhppeieidllkngekmkaeqsdlsfskdwt
fyllvhteftpngqdefscrvkhvtlsepqiikwerdn

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.