PDB entry 7dan

View 7dan on RCSB PDB site
Description: Structure of the Ca2+-bound wild-type peptidylarginine deiminase type III (PAD3)
Class: hydrolase
Keywords: peptidylarginie deiminase, citrullination, post-translational modification, enzyme, active form, calcium, isozyme, HYDROLASE
Deposited on 2020-10-16, released 2021-06-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-06-16, with a file datestamp of 2021-06-11.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Protein-arginine deiminase type-3
    Species: Homo sapiens [TaxId:9606]
    Gene: PADI3, PAD3, PDI3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7dana1, d7dana2, d7dana3
  • Chain 'B':
    Compound: Protein-arginine deiminase type-3
    Species: Homo sapiens [TaxId:9606]
    Gene: PADI3, PAD3, PDI3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7danb1, d7danb2, d7danb3
  • Chain 'C':
    Compound: Protein-arginine deiminase type-3
    Species: Homo sapiens [TaxId:9606]
    Gene: PADI3, PAD3, PDI3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7danc1, d7danc2, d7danc3
  • Heterogens: CA, CL, EDO, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7danA (A:)
mslqrivrvslehptsavcvagvetlvdiygsvpegtemfevygtpgvdiyispnmergr
eradtrrwrfdatleiivvmnspsndlndshvqisyhssheplplayavlyltcvdisld
cdlncegrqdrnfvdkrqwvwgpsgyggillvncdrddpscdvqdncdqhvhclqdledm
svmvlrtqgpaalfddhklvlhtssydakraqvfhicgpedvceayrhvlgqdkvsyevp
rlhgdeerffveglsfpdagftglisfhvtllddsnedfsaspiftdtvvfrvapwimtp
stlpplevyvcrvrnntcfvdavaelarkagcklticpqaenrndrwiqdemelgyvqap
hktlpvvfdsprngelqdfpykrilgpdfgyvtreprdrsvsgldsfgnlevsppvvang
keyplgriliggnlpgssgrrvtqvvrdflhaqkvqppvelfvdwlavghvdeflsfvpa
pdgkgfrmllaspgacfklfqekqkcghgrallfqgvvddeqvktisinqvlsnkdliny
nkfvqscidwnrevlkrelglaecdiidipqlfkterkkataffpdlvnmlvlgkhlgip
kpfgpiingcccleekvrslleplglhctfiddftpyhmlhgevhcgtnvcrkpfsfkww
nmvp

    Sequence, based on observed residues (ATOM records): (download) 
    >7danA (A:)
mslqrivrvslehptsavcvagvetlvdiygsvpegtemfevygtpgvdiyispnmergr
eradtrrwrfdatleiivvmnspsndlndshvqisyhssheplplayavlyltcvdisld
cdlncedkrqwvwgpsgyggillvncdrddpscdqdncdqhvhclqdledmsvmvlrtqg
paalfddhklvlhtssydakraqvfhicgpedvceayrhvlgqdkvsyevprlhgdeerf
fveglsfpdagftglisfhvtllddsnaspiftdtvvfrvapwimtpstlpplevyvcrv
rnntcfvdavaelarkagcklticprwiqdemelgyvqaphktlpvvfdsprngelqdfp
ykrilgpdfgyvtreprvsgldsfgnlevsppvvangkeyplgriliggnlpgrvtqvvr
dflhaqkvqppvelfvdwlavghvdeflsfvpapdgkgfrmllaspgacfklfqekqkcg
hgrallfqgvvddvktisinqvlsnkdlinynkfvqscidwnrevlkrelglaecdiidi
pqlfkterkkataffpdlvnmlvlgkhlgipkpfgpiingcccleekvrslleplglhct
fiddftpyhmlhgevhcgtnvcrkpfsfkwwnmvp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7danB (B:)
mslqrivrvslehptsavcvagvetlvdiygsvpegtemfevygtpgvdiyispnmergr
eradtrrwrfdatleiivvmnspsndlndshvqisyhssheplplayavlyltcvdisld
cdlncegrqdrnfvdkrqwvwgpsgyggillvncdrddpscdvqdncdqhvhclqdledm
svmvlrtqgpaalfddhklvlhtssydakraqvfhicgpedvceayrhvlgqdkvsyevp
rlhgdeerffveglsfpdagftglisfhvtllddsnedfsaspiftdtvvfrvapwimtp
stlpplevyvcrvrnntcfvdavaelarkagcklticpqaenrndrwiqdemelgyvqap
hktlpvvfdsprngelqdfpykrilgpdfgyvtreprdrsvsgldsfgnlevsppvvang
keyplgriliggnlpgssgrrvtqvvrdflhaqkvqppvelfvdwlavghvdeflsfvpa
pdgkgfrmllaspgacfklfqekqkcghgrallfqgvvddeqvktisinqvlsnkdliny
nkfvqscidwnrevlkrelglaecdiidipqlfkterkkataffpdlvnmlvlgkhlgip
kpfgpiingcccleekvrslleplglhctfiddftpyhmlhgevhcgtnvcrkpfsfkww
nmvp

    Sequence, based on observed residues (ATOM records): (download) 
    >7danB (B:)
mslqrivrvslehptsavcvagvetlvdiygsvpegtemfevygtpgvdiyispnmergr
eradtrrwrfdatleiivvmnspsndlndshvqisyhssheplplayavlyltcvdisld
cdlncedkrqwvwgpsgyggillvncdrddvqdncdqhvhclqdledmsvmvlrtqgpaa
lfddhklvlhtssydakraqvfhicgpedvceayrhvlgqdkvsyevprlhgdeerffve
glsfpdagftglisfhvtllddsaspiftdtvvfrvapwimtpstlpplevyvcrvrnnt
cfvdavaelarkagcklticpqrwiqdemelgyvqaphktlpvvfdsprngelqdfpykr
ilgpdfgyvtreprsvsgldsfgnlevsppvvangkeyplgriliggnlpgsrrvtqvvr
dflhaqkvqppvelfvdwlavghvdeflsfvpapdgkgfrmllaspgacfklfqekqkcg
hgrallfqgvvddvktisinqvlsnkdlinynkfvqscidwnrevlkrelglaecdiidi
pqlfkterkkataffpdlvnmlvlgkhlgipkpfgpiingcccleekvrslleplglhct
fiddftpyhmlhgevhcgtnvcrkpfsfkwwnmvp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7danC (C:)
mslqrivrvslehptsavcvagvetlvdiygsvpegtemfevygtpgvdiyispnmergr
eradtrrwrfdatleiivvmnspsndlndshvqisyhssheplplayavlyltcvdisld
cdlncegrqdrnfvdkrqwvwgpsgyggillvncdrddpscdvqdncdqhvhclqdledm
svmvlrtqgpaalfddhklvlhtssydakraqvfhicgpedvceayrhvlgqdkvsyevp
rlhgdeerffveglsfpdagftglisfhvtllddsnedfsaspiftdtvvfrvapwimtp
stlpplevyvcrvrnntcfvdavaelarkagcklticpqaenrndrwiqdemelgyvqap
hktlpvvfdsprngelqdfpykrilgpdfgyvtreprdrsvsgldsfgnlevsppvvang
keyplgriliggnlpgssgrrvtqvvrdflhaqkvqppvelfvdwlavghvdeflsfvpa
pdgkgfrmllaspgacfklfqekqkcghgrallfqgvvddeqvktisinqvlsnkdliny
nkfvqscidwnrevlkrelglaecdiidipqlfkterkkataffpdlvnmlvlgkhlgip
kpfgpiingcccleekvrslleplglhctfiddftpyhmlhgevhcgtnvcrkpfsfkww
nmvp

    Sequence, based on observed residues (ATOM records): (download) 
    >7danC (C:)
mslqrivrvslehptsavcvagvetlvdiygsvpegtemfevygtpgvdiyispnmergr
eradtrrwrfdatleiivvmnspsndlndshvqisyhssheplplayavlyltcvdisld
cdlncedkrqwvwgpsgyggillvncdrddpscddncdqhvhclqdledmsvmvlrtqgp
aalfddhklvlhtssydakraqvfhicgpedvceayrhvlgqdkvsyevprlhgdeerff
veglsfpdagftglisfhvtllddsaspiftdtvvfrvapwimtpstlpplevyvcrvrn
ntcfvdavaelarkagcklticpqrwiqdemelgyvqaphktlpvvfdsprngelqdfpy
krilgpdfgyvtreprdsgldsfgnlevsppvvangkeyplgriliggnlpgrvtqvvrd
flhaqkvqppvelfvdwlavghvdeflsfvpapdgkgfrmllaspgacfklfqekqkcgh
grallfqgvvddeqvktisinqvlsnkdlinynkfvqscidwnrevlkrelglaecdiid
ipqlfkterkkataffpdlvnmlvlgkhlgipkpfgpiingcccleekvrslleplglhc
tfiddftpyhmlhgevhcgtnvcrkpfsfkwwnmvp