PDB entry 7d7c

View 7d7c on RCSB PDB site
Description: cryoem structure of gp55-dependent rna polymerase-promoter open complex
Deposited on 2020-10-03, released 2021-01-20
The last revision was dated 2021-03-17, with a file datestamp of 2021-03-12.
Experiment type: EM
Resolution: 3.6 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA-directed RNA polymerase subunit alpha
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA-directed RNA polymerase subunit alpha
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA-directed RNA polymerase subunit beta
    Species: Escherichia coli 1-392-07_S4_C3 [TaxId:1444275]
    Gene: rpoB, AD40_4833
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: DNA-directed RNA polymerase subunit beta'
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: gp55
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 7D7C
  • Chain 'N':
    Compound: DNA (nontemplate strand)
    Species: Escherichia coli, synthetic [TaxId:562]
  • Chain 'T':
    Compound: DNA (template strand)
    Species: Escherichia coli, synthetic [TaxId:562]
  • Heterogens: MG, ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7d7cA (A:)
    mqgsvteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteve
    idgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgd
    veivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspv
    eriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlrdvrqp
    evkeekpefdpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkksl
    teikdvlasrglslgmrlenwppasiade
    

    Sequence, based on observed residues (ATOM records):
    >7d7cA (A:)
    flkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidgvlhe
    ystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveivkpq
    hvichltdenasismrikvqrgrgyvpastrirpigrllvdacyspveriaynveaarve
    qrtdldklviemetngtidpeeairraatilaeqleafv
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7d7cB (B:)
    mqgsvteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteve
    idgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgd
    veivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspv
    eriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlrdvrqp
    evkeekpefdpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkksl
    teikdvlasrglslgmrlenwppasiade
    

    Sequence, based on observed residues (ATOM records):
    >7d7cB (B:)
    vteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidgv
    lheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveiv
    kpqhvichltdenasismrikvqrgrgyvpastrrllvdacyspveriaynveaarveqr
    tdldklviemetngtidpeeairraatilaeqleafvd
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7d7cC (C:)
    mvysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiq
    sysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeq
    evymgeiplmtdngtfvingtervivsqlhrspgvffdsdkgkthssgkvlynariipyr
    gswldfefdpkdnlfvridrrrklpatiilralnytteqildlffekvifeirdnklqme
    lvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakd
    yidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrl
    salveiyrmmrpgepptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgil
    skddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerls
    lgdldtlmpqdminakpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggltr
    eragfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvt
    deihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqv
    vsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakr
    ggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepverg
    dvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvs
    rdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeek
    llraifgekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdl
    seelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqyde
    lkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskin
    piedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevak
    lrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellk
    lgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplg
    gkaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmp
    esfnvllkeirslginielede
    

    Sequence, based on observed residues (ATOM records):
    >7d7cC (C:)
    vysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiqs
    ysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeqe
    vymgeiplmtdngtfvingtervivsqlhrspgvffdsdkgkthssgkvlynariipyrg
    swldfefdpkdnlfvridrrrklpatiilralnytteqildlffekvifeirdnklqmel
    vperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakdy
    idestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrls
    alveiyrmmrpgepptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgils
    kddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerlsl
    gdldtlmpqdminakpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggltre
    ragfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvtd
    eihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqvv
    svgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakrg
    gvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepvergd
    vladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvsr
    dtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkdsslrvpngvs
    gtvidvqvftrdgvekdkraleieemqlkqakkdlseelqileaglfsriravlvaggve
    aekldklprdrwlelgltdeekqnqleqlaeqydelkhefekkleakrrkitqgddlapg
    vlkivkvylavkrriqpgdkmagrhgnkgviskinpiedmpydengtpvdivlnplgvps
    rmnigqilethlgmaakgigdkinamlkqqqevaklrefiqraydlgadvrqkvdlstfs
    deevmrlaenlrkgmpiatpvfdgakeaeikellklgdlptsgqirlydgrtgeqferpv
    tvgymymlklnhlvddkmharstgsyslvtqqplggkaqfggqrfgemevwaleaygaay
    tlqemltvksddvngrtkmyknivdgnhqmepgmpesfnvllkeirslginieled
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7d7cD (D:)
    mkdllkflkaqtkteefdaikialaspdmirswsfgevkkpetinyrtfkperdglfcar
    ifgpvkdyeclcgkykrlkhrgvicekcgvevtqtkvrrermghielasptahiwflksl
    psrigllldmplrdiervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakm
    gaeaiqallksmdleqeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmilt
    vlpvlppdlrplvpldggrfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlq
    eavdalldngrrgraitgsnkrplksladmikgkqgrfrqnllgkrvdysgrsvitvgpy
    lrlhqcglpkkmalelfkpfiygklelrglattikaakkmvereeavvwdildevirehp
    vllnraptlhrlgiqafepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlea
    ralmmstnnilspangepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsg
    laslharvkvriteyekdangelvaktslkdttvgrailwmivpkglpysivnqalgkka
    iskmlntcyrilglkptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeae
    vaeiqeqfqsglvtagerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfn
    siymmadsgargsaaqirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgar
    kgladtalktansgyltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvl
    grvtaedvlkpgtadilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcyg
    rdlarghiinkgeaigviaaqsigepgtqltmrtfhiggaasraaaessiqvknkgsikl
    snvksvvnssgklvitsrntelklidefgrtkesykvpygavlakgdgeqvaggetvanw
    dphtmpvitevsgfvrftdmidgqtitrqtdeltglsslvvldsaertaggkdlrpalki
    vdaqgndvlipgtdmpaqyflpgkaivqledgvqissgdtlaripqesggtkditgglpr
    vadlfearrpkepailaeisgivsfgketkgkrrlvitpvdgsdpyeemipkwrqlnvfe
    gervergdvisdgpeaphdilrlrgvhavtryivnevqdvyrlqgvkindkhievivrqm
    lrkativnagssdflegeqveysrvkianreleangkvgatysrdllgitkaslatesfi
    saasfqettrvlteaavagkrdelrglkenvivgrlipagtgyayhqdrmrrraageapa
    apqvtaedasaslaellnaglggsdne
    

    Sequence, based on observed residues (ATOM records):
    >7d7cD (D:)
    efdaikialaspdmirswsfgevkkpetinyrtfkperdglfcarifgpvkdyeclcgky
    krlkhrgvicekcgvevtqtkvrrermghielasptahiwflkslpsrigllldmplrdi
    ervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakmgaeaiqallksmdle
    qeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmiltvlpvlppdlrplvpl
    dggrfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlqeavdalldngrrgra
    itgsnkrplksladmikgkqgrfrqnllgkrvdysgrsvitvgpylrlhqcglpkkmale
    lfkpfiygklelrglattikaakkmvereeavvwdildevirehpvllnraptlhrlgiq
    afepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlearalmmstnnilspan
    gepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsglaslharvkvritey
    ekdangelvaktslkdttvgrailwmivpkglpysivnqalgkkaiskmlntcyrilglk
    ptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeaevaeiqeqfqsglvta
    gerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfnsiymmadsgargsaa
    qirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgarkgladtalktansgy
    ltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvlgrvtaedvlkpgtad
    ilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcygrdlarghiinkgeai
    gviaaqsigepgtqltmssiqvknkgsiklsnvksvvnssgklvitsrntelklidefgr
    tkesykvpygavlakgdgeqvaggetvanwdphtmpvitevsgfvrftdmidgqtitrqt
    deltglsslvvldsaertaggkdlrpalkivdaqgndvlipgtdmpaqyflpgkaivqle
    dgvqissgdtlaripqtgglprvadlfearrpkepailaeisgivsfgketkgkrrlvit
    pvdgsdpyeemipkwrqlnvfegervergdvisdgpeaphdilrlrgvhavtryivnevq
    dvyrlqgvkindkhievivrqmlrkativnagssdflegeqveysrvkianreleangkv
    gatysrdllgitkaslatesfisaasfqettrvlteaavagkrdelrglkenvivgrlip
    agtgyayhqdrmrrr
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >7d7cF (F:)
    msetkpkynyvnnkellqaiidwktelannkdpnkvvrqndtiglaimliaeglskrfnf
    sgytqswkqemiadgieasikglhnfdetkyknphayitqacfnafvqrikkerkevakk
    ysyfvhnvydsrdddmvalvdetfiqdiydkmthyeestyrtpgaekksvvddspsldfl
    yeand
    

    Sequence, based on observed residues (ATOM records):
    >7d7cF (F:)
    yvnnkellqaiidwktelanvrqndtiglaimliaeglskrfnfsgytqswkqemiadgi
    easikglhnfdetkyknphayitqacfnafvqrikkerkevakkysyfvhnvydsrdddm
    valvdetfiqdiydkmt
    

  • Chain 'N':
    No sequence available.

  • Chain 'T':
    No sequence available.