PDB entry 7d6r

View 7d6r on RCSB PDB site
Description: Crystal structure of the Stx2a complexed with MMA betaAla peptide
Class: toxin
Keywords: Shiga toxin, TOXIN
Deposited on 2020-10-01, released 2021-04-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-05-26, with a file datestamp of 2021-05-21.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: rRNA N-glycosylase
    Species: Escherichia coli [TaxId:562]
    Gene: STX2A
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7d6ra_
  • Chain 'B':
    Compound: Shiga toxin 2 B subunit
    Species: Escherichia coli [TaxId:562]
    Gene: stxII, stx2B, stx2B_2, stx2dB, stx2vB, stxB2, vtx2B
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7d6rb_
  • Chain 'C':
    Compound: Shiga toxin 2 B subunit
    Species: Escherichia coli [TaxId:562]
    Gene: stxII, stx2B, stx2B_2, stx2dB, stx2vB, stxB2, vtx2B
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7d6rc_
  • Chain 'D':
    Compound: Shiga toxin 2 B subunit
    Species: Escherichia coli [TaxId:562]
    Gene: stxII, stx2B, stx2B_2, stx2dB, stx2vB, stxB2, vtx2B
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7d6rd_
  • Chain 'E':
    Compound: Shiga toxin 2 B subunit
    Species: Escherichia coli [TaxId:562]
    Gene: stxII, stx2B, stx2B_2, stx2dB, stx2vB, stxB2, vtx2B
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7d6re_
  • Chain 'F':
    Compound: Shiga toxin 2 B subunit
    Species: Escherichia coli [TaxId:562]
    Gene: stxII, stx2B, stx2B_2, stx2dB, stx2vB, stxB2, vtx2B
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7d6rf_
  • Chain 'G':
    Compound: MMA betaAla peptide
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 7D6R
  • Heterogens: NH2, 1PS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7d6rA (A:)
reftidfstqqsyvsslnsirteistplehisqgttsvsvinhtppgsyfavdirgldvy
qarfdhlrliieqnnlyvagfvntatntfyrfsdfthisvpgvttvsmttdssyttlqrv
aalersgmqisrhslvssylalmefsgntmtrdasravlrfvtvtaealrfrqiqrefrq
alsetapvytmtpgdvdltlnwgrisnvlpeyrgedgvrvgrisfnnisailgtvaviln
chhqgarsvravneesqpecqitgdrpvikinntlwesntaaaflnrksqflyttgk

    Sequence, based on observed residues (ATOM records): (download) 
    >7d6rA (A:)
reftidfstqqsyvsslnsirteistplehisqgttsvsvinhtppgsyfavdirgldvy
qarfdhlrliieqnnlyvagfvntatntfyrfsdfthisvpgvttvsmttdssyttlqrv
aalersgmqisrhslvssylalmefsgntmtrdasravlrfvtvtaealrfrqiqrefrq
alsetapvytmtpgdvdltlnwgrisnvlpeyrgedgvrvgrisfnnisailgtvaviln
cqpecqitgdrpvikinntlwesntaaaflnrksqflyttgk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7d6rB (B:)
adcakgkiefskyneddtftvkvdgkeywtsrwnlqpllqsaqltgmtvtiksstcesgs
gfaevqfnnd

    Sequence, based on observed residues (ATOM records): (download) 
    >7d6rB (B:)
adcakgkiefskyneddtftvkvdgkeywtsrwnlqpllqsaqltgmtvtiksstcesgs
gfaevqfnn

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7d6rC (C:)
adcakgkiefskyneddtftvkvdgkeywtsrwnlqpllqsaqltgmtvtiksstcesgs
gfaevqfnnd

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7d6rD (D:)
adcakgkiefskyneddtftvkvdgkeywtsrwnlqpllqsaqltgmtvtiksstcesgs
gfaevqfnnd

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >7d6rE (E:)
adcakgkiefskyneddtftvkvdgkeywtsrwnlqpllqsaqltgmtvtiksstcesgs
gfaevqfnnd

    Sequence, based on observed residues (ATOM records): (download) 
    >7d6rE (E:)
adcakgkiefskyneddtftvkvdgkeywtsrwnlqpllqsaqltgmtvtiksstcesgs
gfaevqfnn

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7d6rF (F:)
adcakgkiefskyneddtftvkvdgkeywtsrwnlqpllqsaqltgmtvtiksstcesgs
gfaevqfnnd

  • Chain 'G':
    No sequence available.