SCOPe 2.08: Structural Classification of Proteins

PDB entry 7d5x

View 7d5x on RCSB PDB site
Description: Bovine heart cytochrome c oxidase in a catalytic intermediate, IO10, at 1.74 angstrom resolution
Class: oxidoreductase
Keywords: cytochrome c oxidase membrane protein heme protein, OXIDOREDUCTASE
Deposited on 2020-09-28, released 2021-07-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-07-21, with a file datestamp of 2021-07-16.
Experiment type: XRAY
Resolution: 1.74 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Cytochrome c oxidase subunit 1
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00396 (0-513)
Domains in SCOPe 2.08: d7d5xa_
Chain 'B':
Compound: Cytochrome c oxidase subunit 2
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P68530 (0-226)
Domains in SCOPe 2.08: d7d5xb1, d7d5xb2
Chain 'C':
Compound: Cytochrome c oxidase subunit 3
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00415 (0-258)
Domains in SCOPe 2.08: d7d5xc_
Chain 'D':
Compound: cytochrome c oxidase subunit 4 isoform 1, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00423 (0-143)
Domains in SCOPe 2.08: d7d5xd_
Chain 'E':
Compound: cytochrome c oxidase subunit 5a, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00426 (0-104)
Domains in SCOPe 2.08: d7d5xe_
Chain 'F':
Compound: cytochrome c oxidase subunit 5b, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00428 (0-93)
Domains in SCOPe 2.08: d7d5xf_
Chain 'G':
Compound: Cytochrome c oxidase subunit 6A2, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P07471 (0-83)
Domains in SCOPe 2.08: d7d5xg_
Chain 'H':
Compound: Cytochrome c oxidase subunit 6B1
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00429 (0-78)
Domains in SCOPe 2.08: d7d5xh_
Chain 'I':
Compound: Cytochrome c oxidase subunit 6C
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P04038 (0-72)
Domains in SCOPe 2.08: d7d5xi_
Chain 'J':
Compound: cytochrome c oxidase subunit 7a1, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P07470 (0-57)
Domains in SCOPe 2.08: d7d5xj_
Chain 'K':
Compound: cytochrome c oxidase subunit 7b, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P13183 (0-48)
Domains in SCOPe 2.08: d7d5xk_
Chain 'L':
Compound: cytochrome c oxidase subunit 7c, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00430 (0-45)
Domains in SCOPe 2.08: d7d5xl_
Chain 'M':
Compound: cytochrome c oxidase subunit 8b, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P10175 (0-42)
Domains in SCOPe 2.08: d7d5xm_
Chain 'N':
Compound: Cytochrome c oxidase subunit 1
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00396 (0-513)
Domains in SCOPe 2.08: d7d5xn_
Chain 'O':
Compound: Cytochrome c oxidase subunit 2
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P68530 (0-226)
Domains in SCOPe 2.08: d7d5xo1, d7d5xo2
Chain 'P':
Compound: Cytochrome c oxidase subunit 3
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00415 (0-258)
Domains in SCOPe 2.08: d7d5xp_
Chain 'Q':
Compound: cytochrome c oxidase subunit 4 isoform 1, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00423 (0-143)
Domains in SCOPe 2.08: d7d5xq_
Chain 'R':
Compound: cytochrome c oxidase subunit 5a, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00426 (0-104)
Domains in SCOPe 2.08: d7d5xr_
Chain 'S':
Compound: cytochrome c oxidase subunit 5b, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00428 (0-93)
Domains in SCOPe 2.08: d7d5xs_
Chain 'T':
Compound: Cytochrome c oxidase subunit 6A2, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P07471 (0-83)
Domains in SCOPe 2.08: d7d5xt_
Chain 'U':
Compound: Cytochrome c oxidase subunit 6B1
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00429 (0-78)
Domains in SCOPe 2.08: d7d5xu_
Chain 'V':
Compound: Cytochrome c oxidase subunit 6C
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P04038 (0-72)
Domains in SCOPe 2.08: d7d5xv_
Chain 'W':
Compound: cytochrome c oxidase subunit 7a1, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P07470 (0-57)
Domains in SCOPe 2.08: d7d5xw_
Chain 'X':
Compound: cytochrome c oxidase subunit 7b, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P13183 (0-48)
Domains in SCOPe 2.08: d7d5xx_
Chain 'Y':
Compound: cytochrome c oxidase subunit 7c, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00430 (0-45)
Domains in SCOPe 2.08: d7d5xy_
Chain 'Z':
Compound: cytochrome c oxidase subunit 8b, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P10175 (0-42)
Domains in SCOPe 2.08: d7d5xz_
Heterogens: HEA, CU, MG, NA, PGV, OXY, EDO, DMU, TGL, CUA, PSC, CHD, PEK, CDL, ZN, PO4, HOH

PDB Chain Sequences:

Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)

>7d5xA (A:)
mfinrwlfstnhkdigtlyllfgawagmvgtalslliraelgqpgtllgddqiynvvvta
hafvmiffmvmpimiggfgnwlvplmigapdmafprmnnmsfwllppsfllllassmvea
gagtgwtvypplagnlahagasvdltifslhlagvssilgainfittiinmkppamsqyq
tplfvwsvmitavllllslpvlaagitmlltdrnlnttffdpagggdpilyqhlfwffgh
pevyililpgfgmishivtyysgkkepfgymgmvwammsigflgfivwahhmftvgmdvd
trayftsatmiiaiptgvkvfswlatlhggnikwspammwalgfiflftvggltgivlan
ssldivlhdtyyvvahfhyvlsmgavfaimggfvhwfplfsgytlndtwakihfaimfvg
vnmtffpqhflglsgmprrysdypdaytmwntissmgsfisltavmlmvfiiweafaskr
evltvdltttnlewlngcpppyhtfeeptyvnlk

Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)

>7d5xB (B:)
maypmqlgfqdatspimeellhfhdhtlmivflisslvlyiislmlttklthtstmdaqe
vetiwtilpaiililialpslrilymmdeinnpsltvktmghqwywsyeytdyedlsfds
ymiptselkpgelrllevdnrvvlpmemtirmlvssedvlhswavpslglktdaipgrln
qttlmssrpglyygqcseicgsnhsfmpivlelvplkyfekwsasml

Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)

>7d5xC (C:)
hqthayhmvnpspwpltgalsallmtsgltmwfhfnsmtllmiglttnmltmyqwwrdvi
restfqghhtpavqkglrygmilfiisevlfftgffwafyhsslaptpelggcwpptgih
plnplevpllntsvllasgvsitwahhslmegdrkhmlqalfititlgvyftllqaseyy
eapftisdgvygstffvatgfhglhviigstflivcffrqlkfhftsnhhfgfeaaawyw
hfvdvvwlflyvsiywwgs

Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)

>7d5xD (D:)
svvksedyalpsyvdrrdyplpdvahvknlsasqkalkekekaswsslsidekvelyrlk
fkesfaemnrstnewktvvgaamffigftallliwekhyvygpiphtfeeewvakqtkrm
ldmkvapiqgfsakwdydknewkk

Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)

>7d5xE (E:)
hetdeefdarwvtyfnkpdidawelrkgmntlvgydlvpepkiidaalracrrlndfasa
vrilevvkdkagphkeiypyviqelrptlnelgistpeelgldkv

Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)

>7d5xF (F:)
asgggvptdeeqatglerevmlaarkgqdpynilapkatsgtkedpnlvpsitnkrivgc
iceednstviwfwlhkgeaqrcpscgthyklvph

Chain 'G':
Sequence; same for both SEQRES and ATOM records: (download)

>7d5xG (G:)
asaakgdhggtgartwrfltfglalpsvalctlnswlhsghrerpafipyhhlrirtkpf
swgdgnhtffhnprvnplptgyek

Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)

>7d5xH (H:)
kiknyqtapfdsrfpnqnqtrncwqnyldfhrcekamtakggdvsvcewyrrvykslcpi
swvstwddrraegtfpgki

Chain 'I':
Sequence; same for both SEQRES and ATOM records: (download)

>7d5xI (I:)
stalakpqmrgllarrlrfhivgafmvslgfatfykfavaekrkkayadfyrnydsmkdf
eemrkagifqsak

Chain 'J':
Sequence; same for both SEQRES and ATOM records: (download)

>7d5xJ (J:)
fenrvaekqklfqednglpvhlkggatdnilyrvtmtlclggtlyslyclgwasfphk

Chain 'K':
Sequence; same for both SEQRES and ATOM records: (download)
```
>7d5xK (K:)
apdfhdkygnavlasgatfcvavwvymatqigiewnpspvgrvtpkewr
```
Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
```
>7d5xL (L:)
hyeegpgknipfsvenkwrllammtlffgsgfaapffivrhqllkk
```
Chain 'M':
Sequence; same for both SEQRES and ATOM records: (download)
```
>7d5xM (M:)
itakpaktptspkeqaiglsvtflsfllpagwvlyhldnykks
```

Chain 'N':
Sequence; same for both SEQRES and ATOM records: (download)

>7d5xN (N:)
mfinrwlfstnhkdigtlyllfgawagmvgtalslliraelgqpgtllgddqiynvvvta
hafvmiffmvmpimiggfgnwlvplmigapdmafprmnnmsfwllppsfllllassmvea
gagtgwtvypplagnlahagasvdltifslhlagvssilgainfittiinmkppamsqyq
tplfvwsvmitavllllslpvlaagitmlltdrnlnttffdpagggdpilyqhlfwffgh
pevyililpgfgmishivtyysgkkepfgymgmvwammsigflgfivwahhmftvgmdvd
trayftsatmiiaiptgvkvfswlatlhggnikwspammwalgfiflftvggltgivlan
ssldivlhdtyyvvahfhyvlsmgavfaimggfvhwfplfsgytlndtwakihfaimfvg
vnmtffpqhflglsgmprrysdypdaytmwntissmgsfisltavmlmvfiiweafaskr
evltvdltttnlewlngcpppyhtfeeptyvnlk

Chain 'O':
Sequence; same for both SEQRES and ATOM records: (download)

>7d5xO (O:)
maypmqlgfqdatspimeellhfhdhtlmivflisslvlyiislmlttklthtstmdaqe
vetiwtilpaiililialpslrilymmdeinnpsltvktmghqwywsyeytdyedlsfds
ymiptselkpgelrllevdnrvvlpmemtirmlvssedvlhswavpslglktdaipgrln
qttlmssrpglyygqcseicgsnhsfmpivlelvplkyfekwsasml

Chain 'P':
Sequence; same for both SEQRES and ATOM records: (download)

>7d5xP (P:)
hqthayhmvnpspwpltgalsallmtsgltmwfhfnsmtllmiglttnmltmyqwwrdvi
restfqghhtpavqkglrygmilfiisevlfftgffwafyhsslaptpelggcwpptgih
plnplevpllntsvllasgvsitwahhslmegdrkhmlqalfititlgvyftllqaseyy
eapftisdgvygstffvatgfhglhviigstflivcffrqlkfhftsnhhfgfeaaawyw
hfvdvvwlflyvsiywwgs

Chain 'Q':
Sequence; same for both SEQRES and ATOM records: (download)

>7d5xQ (Q:)
svvksedyalpsyvdrrdyplpdvahvknlsasqkalkekekaswsslsidekvelyrlk
fkesfaemnrstnewktvvgaamffigftallliwekhyvygpiphtfeeewvakqtkrm
ldmkvapiqgfsakwdydknewkk

Chain 'R':
Sequence; same for both SEQRES and ATOM records: (download)

>7d5xR (R:)
hetdeefdarwvtyfnkpdidawelrkgmntlvgydlvpepkiidaalracrrlndfasa
vrilevvkdkagphkeiypyviqelrptlnelgistpeelgldkv

Chain 'S':
Sequence; same for both SEQRES and ATOM records: (download)

>7d5xS (S:)
asgggvptdeeqatglerevmlaarkgqdpynilapkatsgtkedpnlvpsitnkrivgc
iceednstviwfwlhkgeaqrcpscgthyklvph

Chain 'T':
Sequence; same for both SEQRES and ATOM records: (download)

>7d5xT (T:)
asaakgdhggtgartwrfltfglalpsvalctlnswlhsghrerpafipyhhlrirtkpf
swgdgnhtffhnprvnplptgyek

Chain 'U':
Sequence; same for both SEQRES and ATOM records: (download)

>7d5xU (U:)
kiknyqtapfdsrfpnqnqtrncwqnyldfhrcekamtakggdvsvcewyrrvykslcpi
swvstwddrraegtfpgki

Chain 'V':
Sequence; same for both SEQRES and ATOM records: (download)

>7d5xV (V:)
stalakpqmrgllarrlrfhivgafmvslgfatfykfavaekrkkayadfyrnydsmkdf
eemrkagifqsak

Chain 'W':
Sequence; same for both SEQRES and ATOM records: (download)

>7d5xW (W:)
fenrvaekqklfqednglpvhlkggatdnilyrvtmtlclggtlyslyclgwasfphk

Chain 'X':
Sequence; same for both SEQRES and ATOM records: (download)
```
>7d5xX (X:)
apdfhdkygnavlasgatfcvavwvymatqigiewnpspvgrvtpkewr
```
Chain 'Y':
Sequence; same for both SEQRES and ATOM records: (download)
```
>7d5xY (Y:)
hyeegpgknipfsvenkwrllammtlffgsgfaapffivrhqllkk
```
Chain 'Z':
Sequence; same for both SEQRES and ATOM records: (download)
```
>7d5xZ (Z:)
itakpaktptspkeqaiglsvtflsfllpagwvlyhldnykks
```