PDB entry 7d56

View 7d56 on RCSB PDB site
Description: Structure of the peptidylarginine deiminase type III (PAD3) in complex with Cl-amidine
Class: hydrolase
Keywords: Posttransrational modification, citrullination, calcium-dependent, calcium metabolism, CYTOSOLIC PROTEIN, HYDROLASE
Deposited on 2020-09-25, released 2021-06-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-06-16, with a file datestamp of 2021-06-11.
Experiment type: XRAY
Resolution: 3.18 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Protein-arginine deiminase type-3
    Species: Homo sapiens [TaxId:9606]
    Gene: PADI3, PAD3, PDI3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7d56a1, d7d56a2, d7d56a3
  • Chain 'B':
    Compound: Protein-arginine deiminase type-3
    Species: Homo sapiens [TaxId:9606]
    Gene: PADI3, PAD3, PDI3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7d56b1, d7d56b2, d7d56b3
  • Chain 'C':
    Compound: Protein-arginine deiminase type-3
    Species: Homo sapiens [TaxId:9606]
    Gene: PADI3, PAD3, PDI3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7d56c1, d7d56c2, d7d56c3
  • Heterogens: BFB, CA, CL, EDO, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7d56A (A:)
mslqrivrvslehptsavcvagvetlvdiygsvpegtemfevygtpgvdiyispnmergr
eradtrrwrfdatleiivvmnspsndlndshvqisyhssheplplayavlyltcvdisld
cdlncegrqdrnfvdkrqwvwgpsgyggillvncdrddpscdvqdncdqhvhclqdledm
svmvlrtqgpaalfddhklvlhtssydakraqvfhicgpedvceayrhvlgqdkvsyevp
rlhgdeerffveglsfpdagftglisfhvtllddsnedfsaspiftdtvvfrvapwimtp
stlpplevyvcrvrnntcfvdavaelarkagcklticpqaenrndrwiqdemelgyvqap
hktlpvvfdsprngelqdfpykrilgpdfgyvtreprdrsvsgldsfgnlevsppvvang
keyplgriliggnlpgssgrrvtqvvrdflhaqkvqppvelfvdwlavghvdeflsfvpa
pdgkgfrmllaspgacfklfqekqkcghgrallfqgvvddeqvktisinqvlsnkdliny
nkfvqscidwnrevlkrelglaecdiidipqlfkterkkataffpdlvnmlvlgkhlgip
kpfgpiingcccleekvrslleplglhctfiddftpyhmlhgevhcgtnvcrkpfsfkww
nmvp

    Sequence, based on observed residues (ATOM records): (download) 
    >7d56A (A:)
mslqrivrvslehptsavcvagvetlvdiygsvpegtemfevygtpgvdiyispnmergr
eradtrrwrfdatleiivvmnspsndlndshvqisyhssheplplayavlyltcvdisld
cdlnvdkrqwvwgpsgyggillvncdrddpscdqdncdqhvhclqdledmsvmvlrtqgp
aalfddhklvlhtssydakraqvfhicgpedvceayrhvlgqdkvsyevprlhgdeerff
veglsfpdagftglisfhvtllddsneaspiftdtvvfrvapwimtpstlpplevyvcrv
rnntcfvdavaelarkagcklticprwiqdemelgyvqaphktlpvvfdsprngelqdfp
ykrilgpdfgyvtreprvsgldsfgnlevsppvvangkeyplgriliggnlpgsrrvtqv
vrdflhaqkvqppvelfvdwlavghvdeflsfvpapdgkgfrmllaspgacfklfqekqk
cghgrallfqgvvddvktisinqvlsnkdlinynkfvqscidwnrevlkrelglaecdii
dipqlfkterkkataffpdlvnmlvlgkhlgipkpfgpiingcccleekvrslleplglh
ctfiddftpyhmlhgevhcgtnvcrkpfsfkwwnmvp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7d56B (B:)
mslqrivrvslehptsavcvagvetlvdiygsvpegtemfevygtpgvdiyispnmergr
eradtrrwrfdatleiivvmnspsndlndshvqisyhssheplplayavlyltcvdisld
cdlncegrqdrnfvdkrqwvwgpsgyggillvncdrddpscdvqdncdqhvhclqdledm
svmvlrtqgpaalfddhklvlhtssydakraqvfhicgpedvceayrhvlgqdkvsyevp
rlhgdeerffveglsfpdagftglisfhvtllddsnedfsaspiftdtvvfrvapwimtp
stlpplevyvcrvrnntcfvdavaelarkagcklticpqaenrndrwiqdemelgyvqap
hktlpvvfdsprngelqdfpykrilgpdfgyvtreprdrsvsgldsfgnlevsppvvang
keyplgriliggnlpgssgrrvtqvvrdflhaqkvqppvelfvdwlavghvdeflsfvpa
pdgkgfrmllaspgacfklfqekqkcghgrallfqgvvddeqvktisinqvlsnkdliny
nkfvqscidwnrevlkrelglaecdiidipqlfkterkkataffpdlvnmlvlgkhlgip
kpfgpiingcccleekvrslleplglhctfiddftpyhmlhgevhcgtnvcrkpfsfkww
nmvp

    Sequence, based on observed residues (ATOM records): (download) 
    >7d56B (B:)
mslqrivrvslehptsavcvagvetlvdiygsvpegtemfevygtpgvdiyispnmergr
eradtrrwrfdatleiivvmnspsndlndshvqisyhssheplplayavlyltcvdisld
cdlnvdkrqwvwgpsgyggillvncdrddvqdncdqhvhclqdledmsvmvlrtqgpaal
fddhklvlhtssydakraqvfhicgpedvceayrhvlgqdkvsyevprlhgdeerffveg
lsfpdagftglisfhvtllddsaspiftdtvvfrvapwimtpstlpplevyvcrvrnntc
fvdavaelarkagcklticpqarwiqdemelgyvqaphktlpvvfdsprngelqdfpykr
ilgpdfgyvtreprsvsgldsfgnlevsppvvangkeyplgriliggnlpgsrrvtqvvr
dflhaqkvqppvelfvdwlavghvdeflsfvpapdgkgfrmllaspgacfklfqekqkcg
hgrallfqgvvddvktisinqvlsnkdlinynkfvqscidwnrevlkrelglaecdiidi
pqlfkterkkataffpdlvnmlvlgkhlgipkpfgpiingcccleekvrslleplglhct
fiddftpyhmlhgevhcgtnvcrkpfsfkwwnmvp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7d56C (C:)
mslqrivrvslehptsavcvagvetlvdiygsvpegtemfevygtpgvdiyispnmergr
eradtrrwrfdatleiivvmnspsndlndshvqisyhssheplplayavlyltcvdisld
cdlncegrqdrnfvdkrqwvwgpsgyggillvncdrddpscdvqdncdqhvhclqdledm
svmvlrtqgpaalfddhklvlhtssydakraqvfhicgpedvceayrhvlgqdkvsyevp
rlhgdeerffveglsfpdagftglisfhvtllddsnedfsaspiftdtvvfrvapwimtp
stlpplevyvcrvrnntcfvdavaelarkagcklticpqaenrndrwiqdemelgyvqap
hktlpvvfdsprngelqdfpykrilgpdfgyvtreprdrsvsgldsfgnlevsppvvang
keyplgriliggnlpgssgrrvtqvvrdflhaqkvqppvelfvdwlavghvdeflsfvpa
pdgkgfrmllaspgacfklfqekqkcghgrallfqgvvddeqvktisinqvlsnkdliny
nkfvqscidwnrevlkrelglaecdiidipqlfkterkkataffpdlvnmlvlgkhlgip
kpfgpiingcccleekvrslleplglhctfiddftpyhmlhgevhcgtnvcrkpfsfkww
nmvp

    Sequence, based on observed residues (ATOM records): (download) 
    >7d56C (C:)
mslqrivrvslehptsavcvagvetlvdiygsvpegtemfevygtpgvdiyispnmergr
eradtrrwrfdatleiivvmnspsndlndshvqisyhssheplplayavlyltcvdisld
cdlnvdkrqwvwgpsgyggillvncdrddpscdvqdncdqhvhclqdledmsvmvlrtqg
paalfddhklvlhtssydakraqvfhicgpedvceayrhvlgqdkvsyevprlhgdeerf
fveglsfpdagftglisfhvtllddsaspiftdtvvfrvapwimtpstlpplevyvcrvr
nntcfvdavaelarkagcklticpqaenrwiqdemelgyvqaphktlpvvfdsprngelq
dfpykrilgpdfgyvtreprdsgldsfgnlevsppvvangkeyplgriliggnlpgrvtq
vvrdflhaqkvqppvelfvdwlavghvdeflsfvpapdgkgfrmllaspgacfklfqekq
kcghgrallfqgvvddeqvktisinqvlsnkdlinynkfvqscidwnrevlkrelglaec
diidipqlfkterkkataffpdlvnmlvlgkhlgipkpfgpiingcccleekvrsllepl
glhctfiddftpyhmlhgevhcgtnvcrkpfsfkwwnmvp