PDB entry 7d3j

View 7d3j on RCSB PDB site
Description: crystal structure of the cas12i1 r-loop complex after target dna cleavage
Deposited on 2020-09-19, released 2021-05-19
The last revision was dated 2021-06-30, with a file datestamp of 2021-06-25.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 12i1-WT
    Species: Lachnospiraceae bacterium ND2006 [TaxId:1410628]
    Database cross-references and differences (RAF-indexed):
    • PDB 7D3J
  • Chain 'B':
    Compound: RNA (43-mer)
    Species: Lachnospiraceae bacterium ND2006 [TaxId:1410628]
  • Chain 'C':
    Compound: DNA (28-mer)
    Species: Lachnospiraceae bacterium ND2006, synthetic [TaxId:1410628]
  • Chain 'D':
    Compound: DNA (23-mer)
    Species: Lachnospiraceae bacterium ND2006, synthetic [TaxId:1410628]
  • Heterogens: CIT, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7d3jA (A:)
    msnkeknasetrkayttkmiprshdrmkllgnfmdylmdgtpiffelwnqfgggidrdii
    sgtankdkisddlllavnwfkvmpinskpqgvspsnlanlfqqysgsepdiqaqeyfasn
    fdtekhqwkdmrveyerllaelqlsrsdmhhdlklmykekciglslstahyitsvmfgtg
    aknnrqtkhqfyskviqlleestqinsveqlasiilkagdcdsyrklrircsrkgatpsi
    lkivqdyelgtnhddevnvpslianlkeklgrfeyecewkcmekikaflaskvgpyylgs
    ysamlenalspikgmttknckfvlkqidakndikyenepfgkivegffdspyfesdtnvk
    wvlhphhigesniktlwedlnaihskyeediaslsedkkekrikvyqgdvcqtintycee
    vgkeaktplvqllrylysrkddiavdkiidgitflskkhkvekqkinpviqkypsfnfgn
    nskllgkiispkdklkhnlkcnrnqvdnyiwieikvlntktmrwekhhyalsstrfleev
    yypatsenppdalaarfrtktngyegkpalsaeqieqirsapvglrkvkkrqmrleaarq
    qnllprytwgkdfninickrgnnfevtlatkvkkkkeknykvvlgydanivrkntyaaie
    ahangdgvidyndlpvkpiesgfvtvesqvrdksydqlsyngvkllyckphvesrrsfle
    kyrngtmkdnrgnniqidfmkdfeaiaddetslyyfnmkyckllqssirnhssqakeyre
    eifellrdgklsvlklsslsnlsfvmfkvaksligtyfghllkkpknsksdvkappitde
    dkqkadpemfalrlaleekrlnkvkskkeviankivakalelrdkygpvlikgenisdtt
    kkgkksstnsflmdwlargvankvkemvmmhqglefvevnpnftshqdpfvhknpentfr
    arysrctpselteknrkeilsflsdkpskrptnayynegamaflatyglkkndvlgvsle
    kfkqimanilhqrsedqllfpsrggmfylatykldadatsvnwngkqfwvcnadlvaayn
    vglvdiqkdfkkklehhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >7d3jA (A:)
    nasetrkayttkmiprshdrmkllgnfmdylmdgtpiffelwnqfgggidrdiisgtank
    dkisddlllavnwfkvmpinskpqgvspsnlanlfqqysgsepdiqaqeyfasnfdtekh
    qwkdmrveyerllaelqlsrsdmhhdlklmykekciglslstahyitsvmfgtgaknnrq
    tkhqfyskviqlleestqinsveqlasiilkagdcdsyrklrircsrkgatpsilkivqd
    yelgtnhddevnvpslianlkeklgrfeyecewkcmekikaflaskvgpyylgsysamle
    nalspikgmttknckfvlkqidakndikyenepfgkivegffdspyfesdtnvkwvlhph
    higesniktlwedlnaihskyeediaslsedkkekrikvyqgdvcqtintyceevgkeak
    tplvqllrylysrkddiavdkiidgitflskkhkvekqkinpviqkypsfnfgnnskllg
    kiispkdklkhnlkcnrnqvdnyiwieikvlntktmrwekhhyalsstrfleevyypats
    enppdalaarfrtktngyegkpalsaeqieqirsapvglrkvkkrqmrleaarqqnllpr
    ytwgkdfninickrgnnfevtlatkvkkkkeknykvvlgydanivrkntyaaieahangd
    gvidyndlpvkpiesgfvtvesqvrdksydqlsyngvkllyckphvesrrsflekyrngt
    mkdnrgnniqidfmkdfeaiaddetslyyfnmkyckllqssirnhssqakeyreeifell
    rdgklsvlklsslsnlsfvmfkvaksligtyfghllkkpappitdedkqkadpemfalrl
    aleekrlnkvkskkeviankivakalelrdkygpvlikgenisdttkkgkksstnsflmd
    wlargvankvkemvmmhqglefvevnpnftshqdpfvhknpentfrarysrctpseltek
    nrkeilsflsdkpskrptnayynegamaflatyglkkndvlgvslekfkqimanilhqrs
    edqllfpsrggmfylatykldadatsvnwngkqfwvcnadlvaaynvglvdiqkdfk
    

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.