PDB entry 7d0k

View 7d0k on RCSB PDB site
Description: the icosahedral capsid of omono river virus (strain:lz)
Deposited on 2020-09-11, released 2021-03-03
The last revision was dated 2021-03-31, with a file datestamp of 2021-03-26.
Experiment type: EM
Resolution: 2.79 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: capsid protein
    Species: Omono River virus [TaxId:753758]
    Database cross-references and differences (RAF-indexed):
    • PDB 7D0K (0-End)
  • Chain 'B':
    Compound: capsid protein
    Species: Omono River virus [TaxId:753758]
    Database cross-references and differences (RAF-indexed):
    • PDB 7D0K (0-End)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7d0kA (A:)
pisadfsevenapsflslaentdevlkpytgleiqtiitnivgdanpnqsrifdqdrlrg
nqysagglvtqnavsaipftnliprtirvgnilvnsanrlqitetnvseyysnpiiatkl
semisdqvknnqfstwrrdntslqgfnafdiatintailpnglslesmllklsllhsika
mnvdaasinrsqyqvidhntvptigapavvgvnnspvfgedcggnnpvypfgggtgaiaf
hvtlqtvpderksyaifvppailqatsdanealalfalsmsewphalytvtkqttdlaga
nagqqvfiptqstihiggrrvldliiprreiapnpttlvaanamcmvrpqagpdatagai
plaagqlfnmnfigapafeewpmtsylyswagrfdittirqymgrlatmvgvkdaywaah
elnvalsqvapkmttaaggwaaqaansaqqsdvcysslltvtrsaanfplanqpaadmrv
ydtdpatwnkvalglataanlvpeqsmdvpfvvgdarasfwerlqaipmciawtmyyhsr
gittlawdnaytdntnkwlqkmvrntfsttqsvgtiiparygkivcnlyknmfhrapayv
atsvggkelhithferwlpggtyanvysgagavvncfspvlipdiwcqyftaklplfaga
fppaqgqnstkgfnskqglmihrnqnnnlvapylekfadnssyfpvgqgpeindmatwng
rlwmttgnvqyldysgaaiveavppagelpvgkqipllagenapieltnaattcvprysn
dgrriftylttaqsvipvqacnraanlarscwllsnvyaepalqalgdevedafdtltns
sfldvaksvaesagevpatkaltdlqavdvsslpstsdpsnvlsqpaplmspptsss

    Sequence, based on observed residues (ATOM records):
    >7d0kA (A:)
pisadfsevenapsflslaentdevlkpytgleiqtiitnivgdanpnqsrifdqdrlrg
nqysagglvtqnavsaipftnliprtirvgnilvnsanrlqitetnvseyysnpiiatkl
semisdqvknnqfstwrrdntslqgfnafdiatintailpnglslesmllklsllhsika
mnvdaasinrsqyqvidhntvptigapavvgvnnspvfgedcggnnpvypfgggtgaiaf
hvtlqtvpderksyaifvppailqatsdanealalfalsmsewphalytvtkqttdlaga
nagqqvfiptqstihiggrrvldliiprreiapnpttlvaanamcmvrpqagpdatagai
plaagqlfnmnfigapafeewpmtsylyswagrfdittirqymgrlatmvgvkdaywaah
elnvalsqvapkmttaaggwaaqaansaqqsdvcysslltvtrsaanfplanqpaadmrv
ydtdpatwnkvalglataanlvpeqsmdvpfvvgdarasfwerlqaipmciawtmyyhsr
gittlawdnaytdntnkwlqkmvrntfsttqsvgtiiparygkivcnlyknmfhrapayv
atsvggkelhithferwlpggtyanvysgagavvncfspvlipdiwcqyftaklplfaga
fppaqgqnstkgfnskqglmihrnqnnnlvapylekfadnssyfpvgqgpeindmatwng
rlwmttgnvqyldysgaaiveavppagelpvgkqipllagenapieltnaattcvprysn
dgrriftylttaqsvipvqacnraanlarscwllsnvyaepalqalgdevedafdtltns
sfldvaksvaes

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7d0kB (B:)
pisadfsevenapsflslaentdevlkpytgleiqtiitnivgdanpnqsrifdqdrlrg
nqysagglvtqnavsaipftnliprtirvgnilvnsanrlqitetnvseyysnpiiatkl
semisdqvknnqfstwrrdntslqgfnafdiatintailpnglslesmllklsllhsika
mnvdaasinrsqyqvidhntvptigapavvgvnnspvfgedcggnnpvypfgggtgaiaf
hvtlqtvpderksyaifvppailqatsdanealalfalsmsewphalytvtkqttdlaga
nagqqvfiptqstihiggrrvldliiprreiapnpttlvaanamcmvrpqagpdatagai
plaagqlfnmnfigapafeewpmtsylyswagrfdittirqymgrlatmvgvkdaywaah
elnvalsqvapkmttaaggwaaqaansaqqsdvcysslltvtrsaanfplanqpaadmrv
ydtdpatwnkvalglataanlvpeqsmdvpfvvgdarasfwerlqaipmciawtmyyhsr
gittlawdnaytdntnkwlqkmvrntfsttqsvgtiiparygkivcnlyknmfhrapayv
atsvggkelhithferwlpggtyanvysgagavvncfspvlipdiwcqyftaklplfaga
fppaqgqnstkgfnskqglmihrnqnnnlvapylekfadnssyfpvgqgpeindmatwng
rlwmttgnvqyldysgaaiveavppagelpvgkqipllagenapieltnaattcvprysn
dgrriftylttaqsvipvqacnraanlarscwllsnvyaepalqalgdevedafdtltns
sfldvaksvaesagevpatkaltdlqavdvsslpstsdpsnvlsqpaplmspptsss

    Sequence, based on observed residues (ATOM records):
    >7d0kB (B:)
pisadfsevenapsflslaentdevlkpytgleiqtiitnivgdanpnqsrifdqdrlrg
nqysagglvtqnavsaipftnliprtirvgnilvnsanrlqitetnvseyysnpiiatkl
semisdqvknnqfstwrrdntslqgfnafdiatintailpnglslesmllklsllhsika
mnvdaasinrsqyqvidhntvptigapavvgvnnspvfgedcggnnpvypfgggtgaiaf
hvtlqtvpderksyaifvppailqatsdanealalfalsmsewphalytvtkqttdlaga
nagqqvfiptqstihiggrrvldliiprreiapnpttlvaanamcmvrpqagpdatagai
plaagqlfnmnfigapafeewpmtsylyswagrfdittirqymgrlatmvgvkdaywaah
elnvalsqvapkmttaaggwaaqaansaqqsdvcysslltvtrsaanfplanqpaadmrv
ydtdpatwnkvalglataanlvpeqsmdvpfvvgdarasfwerlqaipmciawtmyyhsr
gittlawdnaytdntnkwlqkmvrntfsttqsvgtiiparygkivcnlyknmfhrapayv
atsvggkelhithferwlpggtyanvysgagavvncfspvlipdiwcqyftaklplfaga
fppaqgqnstkgfnskqglmihrnqnnnlvapylekfadnssyfpvgqgpeindmatwng
rlwmttgnvqyldysgaaiveavppagelpvgkqipllagenapieltnaattcvprysn
dgrriftylttaqsvipvqacnraanlarscwllsnvyaepavedafdtltnssfldvak
svaesagevpatkaltdlqavdvsslpstsdpsnvlsqpaplmsppt