PDB entry 7d0c

View 7d0c on RCSB PDB site
Description: s protein of sars-cov-2 in complex bound with p5a-3a1
Deposited on 2020-09-09, released 2021-03-10
The last revision was dated 2021-05-19, with a file datestamp of 2021-05-14.
Experiment type: EM
Resolution: 3.4 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • engineered mutation (985-986)
  • Chain 'B':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • engineered mutation (985-986)
  • Chain 'C':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • engineered mutation (985-986)
  • Chain 'F':
    Compound: Light chain of P5A-3A1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7D0C (0-214)
  • Chain 'G':
    Compound: Heavy chain of P5A-3A1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7D0C (0-218)
  • Chain 'H':
    Compound: Heavy chain of P5A-3A1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7D0C (0-218)
  • Chain 'L':
    Compound: Light chain of P5A-3A1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7D0C (0-214)
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7d0cA (A:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqyikwpwyiwlgfiagliaivmvtimlccmtsccsclkgccscgscckfdedd
sepvlkgvklhytledykddddk

    Sequence, based on observed residues (ATOM records):
    >7d0cA (A:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhanpvlpfndgvyfasteksn
iirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvmesefrvyssannctf
eyvsknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtll
alhrsayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnf
rvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfk
cygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawns
nnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfq
ptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkk
flpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnct
evpsnvfqtragcligaehvnnsyecdipigagicasyqtqsiiaytmslgaensvaysn
nsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltg
iaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvfng
ltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqnvly
enqklianqfnsaigkiqdslssalgklqdvvnqnaqalntlvkqlssnfgaissvlndi
lsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqskrv
dfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpregvfvsngt
hwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpeld

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7d0cB (B:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqyikwpwyiwlgfiagliaivmvtimlccmtsccsclkgccscgscckfdedd
sepvlkgvklhytledykddddk

    Sequence, based on observed residues (ATOM records):
    >7d0cB (B:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhanpvlpfndgvyfasteksn
iirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvmesefrvyssannctf
eyvsknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtll
alhrsayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnf
rvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfk
cygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawns
nnlylyrlfrksnlkpferdisteiyqancyfplqsygfvgyqpyrvvvlsfellhapat
vcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtle
ilditpcsfggvsvitpgtntsnqvavlyqdvnctevtgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtk
tsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktpp
ikdfggfnfsqilpdpskpskrsfiedllfnkvkfngltvlpplltdemiaqytsallag
titsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsa
lgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqsl
qtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflh
vtyvpaqeknfttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsg
ncdvvigivnntvydplqpeld

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7d0cC (C:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqyikwpwyiwlgfiagliaivmvtimlccmtsccsclkgccscgscckfdedd
sepvlkgvklhytledykddddk

    Sequence, based on observed residues (ATOM records):
    >7d0cC (C:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhanpvlpfndgvyfasteksn
iirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvmesefrvyssannctf
eyvsknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtll
alhrsayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnf
rvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfk
cygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawns
nnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfq
ptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkk
flpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnct
evnvfqtragcligaehvnnsyecdipigagicasyqtqsiiaytmslgaensvaysnns
iaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgia
veqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvkfngl
tvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqnvlye
nqklianqfnsaigkiqdslsalgklqdvvnqnaqalntlvkqlssnfgaissvlndils
rldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdf
cgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpregvfvsngthw
fvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpeld

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >7d0cF (F:)
eivltqspgtlslspgeratlscrasqsvsssylawyqqkpgqaprlliygassratgip
drfsgsgsgtdftltisrlepedfavyycqqygssprtfgqgtkleikrtvaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrgec

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >7d0cG (G:)
evqlvesgggliqpggslrlscaasgftvssnymswvrqapgkglewvsviysggstyya
dsvkgrftisrdnskntlylqmnslraedtavyycardygdfyfdywgqgtlvtvssast
kgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgly
slssvvtvpssslgtqtyicnvnhkpsntkvdkkvepks

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >7d0cH (H:)
evqlvesgggliqpggslrlscaasgftvssnymswvrqapgkglewvsviysggstyya
dsvkgrftisrdnskntlylqmnslraedtavyycardygdfyfdywgqgtlvtvssast
kgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgly
slssvvtvpssslgtqtyicnvnhkpsntkvdkkvepks

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >7d0cL (L:)
eivltqspgtlslspgeratlscrasqsvsssylawyqqkpgqaprlliygassratgip
drfsgsgsgtdftltisrlepedfavyycqqygssprtfgqgtkleikrtvaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrgec