PDB entry 7czt

View 7czt on RCSB PDB site
Description: S protein of SARS-CoV-2 in complex bound with P5A-2G9
Class: viral protein
Keywords: SARS-CoV-2, antibody, VIRAL PROTEIN
Deposited on 2020-09-09, released 2021-03-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-05-19, with a file datestamp of 2021-05-14.
Experiment type: EM
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • conflict (985-986)
  • Chain 'B':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • conflict (985-986)
  • Chain 'C':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • conflict (985-986)
  • Chain 'H':
    Compound: Immunoglobulin heavy variable 3-33,chainH of P5A-2G9,Immunoglobulin gamma-1 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Gene: IGHV3-33
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01772 (0-96)
    • PDB 7CZT (97-107)
    • Uniprot P0DOX5 (108-End)
  • Chain 'I':
    Compound: Immunoglobulin heavy variable 3-33,chainH of P5A-2G9,Immunoglobulin gamma-1 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Gene: IGHV3-33
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01772 (0-96)
    • PDB 7CZT (97-107)
    • Uniprot P0DOX5 (108-End)
  • Chain 'L':
    Compound: IG c689_light_IGLV5-37_IGLJ3,IGL@ protein
    Species: Homo sapiens [TaxId:9606]
    Gene: IGL@
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A5C2GMM2 (0-112)
      • conflict (30)
      • conflict (56)
      • insertion (102)
      • conflict (103-104)
      • conflict (108)
      • conflict (112)
    • Uniprot Q8N5F4 (113-End)
    Domains in SCOPe 2.08: d7cztl1, d7cztl2
  • Chain 'M':
    Compound: IG c689_light_IGLV5-37_IGLJ3,IGL@ protein
    Species: Homo sapiens [TaxId:9606]
    Gene: IGL@
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A5C2GMM2 (0-112)
      • conflict (30)
      • conflict (56)
      • insertion (102)
      • conflict (103-104)
      • conflict (108)
      • conflict (112)
    • Uniprot Q8N5F4 (113-End)
    Domains in SCOPe 2.08: d7cztm1, d7cztm2
  • Heterogens: NAG

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >7cztL (L:)
qpvltqppsssaspgesarltctlpsdinvssyniywyqqkpgsppryllyyysdsdkgq
gsgvpsrfsgskdasantgillisglqsedeadyycmiwpsnalyvfgtgtkvtvlgqpk
aapsvtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnn
kyaassylsltpeqwkshrsyscqvthegstvektvaptecs

    Sequence, based on observed residues (ATOM records): (download) 
    >7cztL (L:)
qpvltqppsssaspgesarltctlpsdinvssyniywyqqkpgsppryllyyysdsdkgq
gsgvpsrfsgskdasantgillisglqsedeadyycmiwpsnalyvfgtgtkvtvlgqpk
aapsvtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnn
kyaassylsltpeqwkshrsyscqvthegstvektvapt

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >7cztM (M:)
qpvltqppsssaspgesarltctlpsdinvssyniywyqqkpgsppryllyyysdsdkgq
gsgvpsrfsgskdasantgillisglqsedeadyycmiwpsnalyvfgtgtkvtvlgqpk
aapsvtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnn
kyaassylsltpeqwkshrsyscqvthegstvektvaptecs

    Sequence, based on observed residues (ATOM records): (download) 
    >7cztM (M:)
qpvltqppsssaspgesarltctlpsdinvssyniywyqqkpgsppryllyyysdsdkgq
gsgvpsrfsgskdasantgillisglqsedeadyycmiwpsnalyvfgtgtkvtvlgqpk
aapsvtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnn
kyaassylsltpeqwkshrsyscqvthegstvektvapt