PDB entry 7cwl

View 7cwl on RCSB PDB site
Description: sars-cov-2 spike protein and p17 fab complex with one rbd in close state
Deposited on 2020-08-29, released 2021-01-27
The last revision was dated 2021-01-27, with a file datestamp of 2021-01-22.
Experiment type: EM
Resolution: 3.8 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Fab P17 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CWL (0-119)
  • Chain 'H':
    Compound: Fab P17 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CWL (0-119)
  • Chain 'I':
    Compound: Fab P17 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CWL (0-119)
  • Chain 'J':
    Compound: Fab P17 light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CWL (0-107)
  • Chain 'K':
    Compound: Fab P17 light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CWL (Start-107)
  • Chain 'L':
    Compound: Fab P17 light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CWL (0-107)
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7cwlA (A:)
    mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
    nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
    nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
    gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
    llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
    ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
    cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
    ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
    ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
    fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
    gtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
    ecdipigagicasyqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnfti
    svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
    vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
    lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
    qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
    tlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeira
    sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
    ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
    lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
    qelgkyeqyikwpwyiwlgfiagliaivmvtimlccmtsccsclkgccscgscckfdedd
    sepvlkgvklhyt
    

    Sequence, based on observed residues (ATOM records):
    >7cwlA (A:)
    qcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgt
    ngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcef
    qfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefv
    fknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpsg
    wtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsn
    frvqptesivrfpnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcy
    gvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnn
    ldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqpt
    ngvgyqpyrvvvlsfellhapatvcgpstnlvknkcvnfnfngltgtgvltesnkkflpf
    qqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnctevnv
    fqtragcligaehvnnsyecdipigagicasyqtsqsiiaytmslgaensvaysnnsiai
    ptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveq
    dkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtdlicaqk
    fngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqn
    vlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgais
    svlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvl
    gqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpregv
    fvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpelds
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7cwlB (B:)
    mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
    nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
    nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
    gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
    llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
    ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
    cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
    ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
    ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
    fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
    gtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
    ecdipigagicasyqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnfti
    svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
    vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
    lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
    qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
    tlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeira
    sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
    ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
    lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
    qelgkyeqyikwpwyiwlgfiagliaivmvtimlccmtsccsclkgccscgscckfdedd
    sepvlkgvklhyt
    

    Sequence, based on observed residues (ATOM records):
    >7cwlB (B:)
    qcvnlttrtqlppaytnsftrgvyyrssvlhstqdlflpffsnvtwfhaihvsgtngtkr
    fdnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqfcnd
    pflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfknid
    gyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpsgwtaga
    aayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqp
    tesivrfpnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvspt
    klndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskv
    ggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgy
    qpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqf
    grdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnctevnvfqt
    ragcligaehvnnsyecdipigagicasyqtsqsiiaytmslgaensvaysnnsiaiptn
    ftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkn
    tqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtdlicaqkfng
    ltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqnvly
    enqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaissvl
    ndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqs
    krvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpregvfvs
    ngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpelds
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7cwlC (C:)
    mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
    nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
    nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
    gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
    llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
    ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
    cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
    ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
    ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
    fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
    gtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
    ecdipigagicasyqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnfti
    svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
    vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
    lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
    qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
    tlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeira
    sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
    ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
    lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
    qelgkyeqyikwpwyiwlgfiagliaivmvtimlccmtsccsclkgccscgscckfdedd
    sepvlkgvklhyt
    

    Sequence, based on observed residues (ATOM records):
    >7cwlC (C:)
    qcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgt
    ngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcef
    qfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefv
    fknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpsg
    wtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsn
    frvqptesivrfpnnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkc
    ygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsn
    nldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqp
    tngvgyqpyrvvvlsfellhapatvcgpstnlvknkcvnfnfngltgtgvltesnkkflp
    fqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnctevn
    vfqtragcligaehvnnsyecdipigagicasyqtsqsiiaytmslgaensvaysnnsia
    iptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiave
    qdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtdlicaq
    kfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtq
    nvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgai
    ssvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecv
    lgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpreg
    vfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpelds
    

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >7cwlG (G:)
    qqlvesgggvvqpgrslrlscaasgftfssyamhwvrqapgkglewvavisydgsnkyya
    dsvkgrftisrdnskntlylqmnslraedtavyycarhatlmnnkdiwgqgtlvtvssas
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >7cwlH (H:)
    qqlvesgggvvqpgrslrlscaasgftfssyamhwvrqapgkglewvavisydgsnkyya
    dsvkgrftisrdnskntlylqmnslraedtavyycarhatlmnnkdiwgqgtlvtvssas
    

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >7cwlI (I:)
    qqlvesgggvvqpgrslrlscaasgftfssyamhwvrqapgkglewvavisydgsnkyya
    dsvkgrftisrdnskntlylqmnslraedtavyycarhatlmnnkdiwgqgtlvtvssas
    

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >7cwlJ (J:)
    gdiqltqspsslsasvgdrvtitcrasqsissylnwyqqkpgkapklliyaasslqsgvp
    srfsgsgsgtdftltisslqpedfatyycqqsystprtfgqgtkveik
    

  • Chain 'K':
    Sequence, based on SEQRES records:
    >7cwlK (K:)
    gdiqltqspsslsasvgdrvtitcrasqsissylnwyqqkpgkapklliyaasslqsgvp
    srfsgsgsgtdftltisslqpedfatyycqqsystprtfgqgtkveik
    

    Sequence, based on observed residues (ATOM records):
    >7cwlK (K:)
    diqltqspsslsasvgdrvtitcrasqsissylnwyqqkpgkapklliyaasslqsgvps
    rfsgsgsgtdftltisslqpedfatyycqqsystprtfgqgtkveik
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >7cwlL (L:)
    gdiqltqspsslsasvgdrvtitcrasqsissylnwyqqkpgkapklliyaasslqsgvp
    srfsgsgsgtdftltisslqpedfatyycqqsystprtfgqgtkveik