PDB entry 7cvz

View 7cvz on RCSB PDB site
Description: cryo-em structure of chikungunya virus in complex with fab fragments of mab chk-263
Deposited on 2020-08-27, released 2020-11-04
The last revision was dated 2020-11-18, with a file datestamp of 2020-11-13.
Experiment type: EM
Resolution: N/A
R-factor: N/A
AEROSPACI score: -0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: E1 glycoprotein
    Species: CHIKUNGUNYA VIRUS [TaxId:37124]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CVZ (0-438)
  • Chain 'B':
    Compound: e2 glycoprotein
    Species: Chikungunya virus [TaxId:37124]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CVZ (0-418)
  • Chain 'C':
    Compound: capsid protein
    Species: Chikungunya virus [TaxId:37124]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: E1 glycoprotein
    Species: CHIKUNGUNYA VIRUS [TaxId:37124]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CVZ (0-438)
  • Chain 'E':
    Compound: e2 glycoprotein
    Species: Chikungunya virus [TaxId:37124]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CVZ (0-418)
  • Chain 'F':
    Compound: capsid protein
    Species: Chikungunya virus [TaxId:37124]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: E1 glycoprotein
    Species: CHIKUNGUNYA VIRUS [TaxId:37124]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CVZ (0-438)
  • Chain 'H':
    Compound: e2 glycoprotein
    Species: Chikungunya virus [TaxId:37124]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CVZ (0-418)
  • Chain 'I':
    Compound: capsid protein
    Species: Chikungunya virus [TaxId:37124]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: E1 glycoprotein
    Species: CHIKUNGUNYA VIRUS [TaxId:37124]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CVZ (0-438)
  • Chain 'K':
    Compound: e2 glycoprotein
    Species: Chikungunya virus [TaxId:37124]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CVZ (0-418)
  • Chain 'L':
    Compound: capsid protein
    Species: Chikungunya virus [TaxId:37124]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: Fab heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CVZ (0-215)
  • Chain 'P':
    Compound: Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CVZ (0-212)
  • Chain 'Q':
    Compound: Fab heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CVZ (0-215)
  • Chain 'R':
    Compound: Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CVZ (0-212)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >7cvzA (A:)
yehvtvipntvgvpyktlvnrpgyspmvlemellsvtleptlsldyitceyktvipspyv
kccgtaeckdknlpdysckvftgvypfmwggaycfcdaentqlseahveksescktefas
ayrahtasasaklrvlyqgnnitvtayangdhavtvkdakfivgpmssawtpfdnkivvy
kgdvynmdyppfgagrpgqfgdiqsrtpeskdvyantqlvlqrpaagtvhvpysqapsgf
kywlkergaslqhtapfgcqiatnpvravncavgnmpisidipeaaftrvvdapsltdms
cevpacthssdfggvaiikyaaskkgkcavhsmtnavtireaeievegnsqlqisfstal
asaefrvqvcstqvhcaaechppkrttvyypashttlgvqdisatamswvqkitggvglv
vavaalilivvlcvsfsrh

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >7cvzB (B:)
nfnvykatrpylahcpdcgeghschspvalerirneatdgtlkiqvslqigiktddshdw
tklrymdnhmpadaeraglfvrtsapctitgtighfilarcpkgetltvgftdsrkishs
cthpfhhdppvigrekfhsrpqhgkelpcstyvqstaatteeievhmppdtpdhtlmsqq
sgnvkitvngqtvrykcncggsnegltttdkvinnckvdqchaavtnhkkwqynsplvpr
naelgdrkgkihipfplanvtcrvpkarnptvtygknqvimllypdhptllsyrnmgeep
nyqeewvmhkkevvltvpteglevtwgnnepykywpqlstngtahghpheiilyyyelyp
tmtvvvvsvatfillsmvgmaagmcmcarrrcitpyeltpgatvpfllsliccirtaka

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >7cvzC (C:)
ndcifevkhegkvtgyaclvgdkvmkpahvkgtidnadlaklafkrsskydlecaqipvh
mksdaskfthekpegyynwhhgavqysggrftiptgagkpgdsgrpifdnkgrvvaivlg
ganegartalsvvtwnkdivtkitpegaeew

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >7cvzD (D:)
yehvtvipntvgvpyktlvnrpgyspmvlemellsvtleptlsldyitceyktvipspyv
kccgtaeckdknlpdysckvftgvypfmwggaycfcdaentqlseahveksescktefas
ayrahtasasaklrvlyqgnnitvtayangdhavtvkdakfivgpmssawtpfdnkivvy
kgdvynmdyppfgagrpgqfgdiqsrtpeskdvyantqlvlqrpaagtvhvpysqapsgf
kywlkergaslqhtapfgcqiatnpvravncavgnmpisidipeaaftrvvdapsltdms
cevpacthssdfggvaiikyaaskkgkcavhsmtnavtireaeievegnsqlqisfstal
asaefrvqvcstqvhcaaechppkrttvyypashttlgvqdisatamswvqkitggvglv
vavaalilivvlcvsfsrh

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >7cvzE (E:)
nfnvykatrpylahcpdcgeghschspvalerirneatdgtlkiqvslqigiktddshdw
tklrymdnhmpadaeraglfvrtsapctitgtighfilarcpkgetltvgftdsrkishs
cthpfhhdppvigrekfhsrpqhgkelpcstyvqstaatteeievhmppdtpdhtlmsqq
sgnvkitvngqtvrykcncggsnegltttdkvinnckvdqchaavtnhkkwqynsplvpr
naelgdrkgkihipfplanvtcrvpkarnptvtygknqvimllypdhptllsyrnmgeep
nyqeewvmhkkevvltvpteglevtwgnnepykywpqlstngtahghpheiilyyyelyp
tmtvvvvsvatfillsmvgmaagmcmcarrrcitpyeltpgatvpfllsliccirtaka

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >7cvzF (F:)
ndcifevkhegkvtgyaclvgdkvmkpahvkgtidnadlaklafkrsskydlecaqipvh
mksdaskfthekpegyynwhhgavqysggrftiptgagkpgdsgrpifdnkgrvvaivlg
ganegartalsvvtwnkdivtkitpegaeew

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >7cvzG (G:)
yehvtvipntvgvpyktlvnrpgyspmvlemellsvtleptlsldyitceyktvipspyv
kccgtaeckdknlpdysckvftgvypfmwggaycfcdaentqlseahveksescktefas
ayrahtasasaklrvlyqgnnitvtayangdhavtvkdakfivgpmssawtpfdnkivvy
kgdvynmdyppfgagrpgqfgdiqsrtpeskdvyantqlvlqrpaagtvhvpysqapsgf
kywlkergaslqhtapfgcqiatnpvravncavgnmpisidipeaaftrvvdapsltdms
cevpacthssdfggvaiikyaaskkgkcavhsmtnavtireaeievegnsqlqisfstal
asaefrvqvcstqvhcaaechppkrttvyypashttlgvqdisatamswvqkitggvglv
vavaalilivvlcvsfsrh

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >7cvzH (H:)
nfnvykatrpylahcpdcgeghschspvalerirneatdgtlkiqvslqigiktddshdw
tklrymdnhmpadaeraglfvrtsapctitgtighfilarcpkgetltvgftdsrkishs
cthpfhhdppvigrekfhsrpqhgkelpcstyvqstaatteeievhmppdtpdhtlmsqq
sgnvkitvngqtvrykcncggsnegltttdkvinnckvdqchaavtnhkkwqynsplvpr
naelgdrkgkihipfplanvtcrvpkarnptvtygknqvimllypdhptllsyrnmgeep
nyqeewvmhkkevvltvpteglevtwgnnepykywpqlstngtahghpheiilyyyelyp
tmtvvvvsvatfillsmvgmaagmcmcarrrcitpyeltpgatvpfllsliccirtaka

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >7cvzI (I:)
ndcifevkhegkvtgyaclvgdkvmkpahvkgtidnadlaklafkrsskydlecaqipvh
mksdaskfthekpegyynwhhgavqysggrftiptgagkpgdsgrpifdnkgrvvaivlg
ganegartalsvvtwnkdivtkitpegaeew

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >7cvzJ (J:)
yehvtvipntvgvpyktlvnrpgyspmvlemellsvtleptlsldyitceyktvipspyv
kccgtaeckdknlpdysckvftgvypfmwggaycfcdaentqlseahveksescktefas
ayrahtasasaklrvlyqgnnitvtayangdhavtvkdakfivgpmssawtpfdnkivvy
kgdvynmdyppfgagrpgqfgdiqsrtpeskdvyantqlvlqrpaagtvhvpysqapsgf
kywlkergaslqhtapfgcqiatnpvravncavgnmpisidipeaaftrvvdapsltdms
cevpacthssdfggvaiikyaaskkgkcavhsmtnavtireaeievegnsqlqisfstal
asaefrvqvcstqvhcaaechppkrttvyypashttlgvqdisatamswvqkitggvglv
vavaalilivvlcvsfsrh

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >7cvzK (K:)
nfnvykatrpylahcpdcgeghschspvalerirneatdgtlkiqvslqigiktddshdw
tklrymdnhmpadaeraglfvrtsapctitgtighfilarcpkgetltvgftdsrkishs
cthpfhhdppvigrekfhsrpqhgkelpcstyvqstaatteeievhmppdtpdhtlmsqq
sgnvkitvngqtvrykcncggsnegltttdkvinnckvdqchaavtnhkkwqynsplvpr
naelgdrkgkihipfplanvtcrvpkarnptvtygknqvimllypdhptllsyrnmgeep
nyqeewvmhkkevvltvpteglevtwgnnepykywpqlstngtahghpheiilyyyelyp
tmtvvvvsvatfillsmvgmaagmcmcarrrcitpyeltpgatvpfllsliccirtaka

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >7cvzL (L:)
ndcifevkhegkvtgyaclvgdkvmkpahvkgtidnadlaklafkrsskydlecaqipvh
mksdaskfthekpegyynwhhgavqysggrftiptgagkpgdsgrpifdnkgrvvaivlg
ganegartalsvvtwnkdivtkitpegaeew

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records:
    >7cvzO (O:)
vqlqqsgaelvkpgasvkisckasgyafssywmnwvkqrpgkglewigqiypgdgdtnyn
gkfkgkatltadkssstaymqlssltsedsavyfcarggltidywgqgttltvssaktta
psvyplapvcggttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpallqsglytls
ssvtvtsntwpsqtitcnvahpasstkvdkkiesrr

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >7cvzP (P:)
divltqspatlsvtpgdsvslscrasqsisdnlhwyqqkshespgllikyasqsisgips
rfsgsgsgtdftlsinsvetedfgmyfcqqsnswpytfgggtkleikradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrne

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records:
    >7cvzQ (Q:)
vqlqqsgaelvkpgasvkisckasgyafssywmnwvkqrpgkglewigqiypgdgdtnyn
gkfkgkatltadkssstaymqlssltsedsavyfcarggltidywgqgttltvssaktta
psvyplapvcggttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpallqsglytls
ssvtvtsntwpsqtitcnvahpasstkvdkkiesrr

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records:
    >7cvzR (R:)
divltqspatlsvtpgdsvslscrasqsisdnlhwyqqkshespgllikyasqsisgips
rfsgsgsgtdftlsinsvetedfgmyfcqqsnswpytfgggtkleikradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrne