SCOPe 2.08: Structural Classification of Proteins

PDB entry 7cp5

View 7cp5 on RCSB PDB site
Description: Bovine heart cytochrome c oxidase in a catalytic intermediate of E at 1.76 angstrom resolution
Class: oxidoreductase
Keywords: cytochrome c oxidase membrane protein heme protein, OXIDOREDUCTASE
Deposited on 2020-08-06, released 2021-07-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-07-21, with a file datestamp of 2021-07-16.
Experiment type: XRAY
Resolution: 1.76 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Cytochrome c oxidase subunit 1
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00396 (0-513)
Domains in SCOPe 2.08: d7cp5a_
Chain 'B':
Compound: Cytochrome c oxidase subunit 2
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P68530 (0-226)
Domains in SCOPe 2.08: d7cp5b1, d7cp5b2
Chain 'C':
Compound: Cytochrome c oxidase subunit 3
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00415 (0-258)
Domains in SCOPe 2.08: d7cp5c_
Chain 'D':
Compound: cytochrome c oxidase subunit 4 isoform 1, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00423 (0-143)
Domains in SCOPe 2.08: d7cp5d_
Chain 'E':
Compound: cytochrome c oxidase subunit 5a, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00426 (0-104)
Domains in SCOPe 2.08: d7cp5e_
Chain 'F':
Compound: cytochrome c oxidase subunit 5b, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00428 (0-93)
Domains in SCOPe 2.08: d7cp5f_
Chain 'G':
Compound: Cytochrome c oxidase subunit 6A2, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P07471 (0-83)
Domains in SCOPe 2.08: d7cp5g_
Chain 'H':
Compound: Cytochrome c oxidase subunit 6B1
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00429 (0-78)
Domains in SCOPe 2.08: d7cp5h_
Chain 'I':
Compound: Cytochrome c oxidase subunit 6C
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P04038 (0-72)
Domains in SCOPe 2.08: d7cp5i_
Chain 'J':
Compound: cytochrome c oxidase subunit 7a1, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P07470 (0-57)
Domains in SCOPe 2.08: d7cp5j_
Chain 'K':
Compound: cytochrome c oxidase subunit 7b, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P13183 (0-48)
Domains in SCOPe 2.08: d7cp5k_
Chain 'L':
Compound: cytochrome c oxidase subunit 7c, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00430 (0-45)
Domains in SCOPe 2.08: d7cp5l_
Chain 'M':
Compound: cytochrome c oxidase subunit 8b, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P10175 (0-42)
Domains in SCOPe 2.08: d7cp5m_
Chain 'N':
Compound: Cytochrome c oxidase subunit 1
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00396 (0-513)
Domains in SCOPe 2.08: d7cp5n_
Chain 'O':
Compound: Cytochrome c oxidase subunit 2
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P68530 (0-226)
Domains in SCOPe 2.08: d7cp5o1, d7cp5o2
Chain 'P':
Compound: Cytochrome c oxidase subunit 3
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00415 (0-258)
Domains in SCOPe 2.08: d7cp5p_
Chain 'Q':
Compound: cytochrome c oxidase subunit 4 isoform 1, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00423 (0-143)
Domains in SCOPe 2.08: d7cp5q_
Chain 'R':
Compound: cytochrome c oxidase subunit 5a, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00426 (0-104)
Domains in SCOPe 2.08: d7cp5r_
Chain 'S':
Compound: cytochrome c oxidase subunit 5b, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00428 (0-93)
Domains in SCOPe 2.08: d7cp5s_
Chain 'T':
Compound: Cytochrome c oxidase subunit 6A2, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P07471 (0-83)
Domains in SCOPe 2.08: d7cp5t_
Chain 'U':
Compound: Cytochrome c oxidase subunit 6B1
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00429 (0-78)
Domains in SCOPe 2.08: d7cp5u_
Chain 'V':
Compound: Cytochrome c oxidase subunit 6C
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P04038 (0-72)
Domains in SCOPe 2.08: d7cp5v_
Chain 'W':
Compound: cytochrome c oxidase subunit 7a1, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P07470 (0-57)
Domains in SCOPe 2.08: d7cp5w_
Chain 'X':
Compound: cytochrome c oxidase subunit 7b, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P13183 (0-48)
Domains in SCOPe 2.08: d7cp5x_
Chain 'Y':
Compound: cytochrome c oxidase subunit 7c, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00430 (0-45)
Domains in SCOPe 2.08: d7cp5y_
Chain 'Z':
Compound: cytochrome c oxidase subunit 8b, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P10175 (0-42)
Domains in SCOPe 2.08: d7cp5z_
Heterogens: HEA, CU, MG, NA, PGV, PSC, PER, EDO, TGL, CUA, CHD, DMU, CDL, PEK, ZN, PO4, HOH

PDB Chain Sequences:

Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)

>7cp5A (A:)
mfinrwlfstnhkdigtlyllfgawagmvgtalslliraelgqpgtllgddqiynvvvta
hafvmiffmvmpimiggfgnwlvplmigapdmafprmnnmsfwllppsfllllassmvea
gagtgwtvypplagnlahagasvdltifslhlagvssilgainfittiinmkppamsqyq
tplfvwsvmitavllllslpvlaagitmlltdrnlnttffdpagggdpilyqhlfwffgh
pevyililpgfgmishivtyysgkkepfgymgmvwammsigflgfivwahhmftvgmdvd
trayftsatmiiaiptgvkvfswlatlhggnikwspammwalgfiflftvggltgivlan
ssldivlhdtyyvvahfhyvlsmgavfaimggfvhwfplfsgytlndtwakihfaimfvg
vnmtffpqhflglsgmprrysdypdaytmwntissmgsfisltavmlmvfiiweafaskr
evltvdltttnlewlngcpppyhtfeeptyvnlk

Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)

>7cp5B (B:)
maypmqlgfqdatspimeellhfhdhtlmivflisslvlyiislmlttklthtstmdaqe
vetiwtilpaiililialpslrilymmdeinnpsltvktmghqwywsyeytdyedlsfds
ymiptselkpgelrllevdnrvvlpmemtirmlvssedvlhswavpslglktdaipgrln
qttlmssrpglyygqcseicgsnhsfmpivlelvplkyfekwsasml

Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)

>7cp5C (C:)
hqthayhmvnpspwpltgalsallmtsgltmwfhfnsmtllmiglttnmltmyqwwrdvi
restfqghhtpavqkglrygmilfiisevlfftgffwafyhsslaptpelggcwpptgih
plnplevpllntsvllasgvsitwahhslmegdrkhmlqalfititlgvyftllqaseyy
eapftisdgvygstffvatgfhglhviigstflivcffrqlkfhftsnhhfgfeaaawyw
hfvdvvwlflyvsiywwgs

Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)

>7cp5D (D:)
svvksedyalpsyvdrrdyplpdvahvknlsasqkalkekekaswsslsidekvelyrlk
fkesfaemnrstnewktvvgaamffigftallliwekhyvygpiphtfeeewvakqtkrm
ldmkvapiqgfsakwdydknewkk

Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)

>7cp5E (E:)
hetdeefdarwvtyfnkpdidawelrkgmntlvgydlvpepkiidaalracrrlndfasa
vrilevvkdkagphkeiypyviqelrptlnelgistpeelgldkv

Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)

>7cp5F (F:)
asgggvptdeeqatglerevmlaarkgqdpynilapkatsgtkedpnlvpsitnkrivgc
iceednstviwfwlhkgeaqrcpscgthyklvph

Chain 'G':
Sequence; same for both SEQRES and ATOM records: (download)

>7cp5G (G:)
asaakgdhggtgartwrfltfglalpsvalctlnswlhsghrerpafipyhhlrirtkpf
swgdgnhtffhnprvnplptgyek

Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)

>7cp5H (H:)
kiknyqtapfdsrfpnqnqtrncwqnyldfhrcekamtakggdvsvcewyrrvykslcpi
swvstwddrraegtfpgki

Chain 'I':
Sequence; same for both SEQRES and ATOM records: (download)

>7cp5I (I:)
stalakpqmrgllarrlrfhivgafmvslgfatfykfavaekrkkayadfyrnydsmkdf
eemrkagifqsak

Chain 'J':
Sequence; same for both SEQRES and ATOM records: (download)

>7cp5J (J:)
fenrvaekqklfqednglpvhlkggatdnilyrvtmtlclggtlyslyclgwasfphk

Chain 'K':
Sequence; same for both SEQRES and ATOM records: (download)
```
>7cp5K (K:)
apdfhdkygnavlasgatfcvavwvymatqigiewnpspvgrvtpkewr
```
Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
```
>7cp5L (L:)
hyeegpgknipfsvenkwrllammtlffgsgfaapffivrhqllkk
```
Chain 'M':
Sequence; same for both SEQRES and ATOM records: (download)
```
>7cp5M (M:)
itakpaktptspkeqaiglsvtflsfllpagwvlyhldnykks
```

Chain 'N':
Sequence; same for both SEQRES and ATOM records: (download)

>7cp5N (N:)
mfinrwlfstnhkdigtlyllfgawagmvgtalslliraelgqpgtllgddqiynvvvta
hafvmiffmvmpimiggfgnwlvplmigapdmafprmnnmsfwllppsfllllassmvea
gagtgwtvypplagnlahagasvdltifslhlagvssilgainfittiinmkppamsqyq
tplfvwsvmitavllllslpvlaagitmlltdrnlnttffdpagggdpilyqhlfwffgh
pevyililpgfgmishivtyysgkkepfgymgmvwammsigflgfivwahhmftvgmdvd
trayftsatmiiaiptgvkvfswlatlhggnikwspammwalgfiflftvggltgivlan
ssldivlhdtyyvvahfhyvlsmgavfaimggfvhwfplfsgytlndtwakihfaimfvg
vnmtffpqhflglsgmprrysdypdaytmwntissmgsfisltavmlmvfiiweafaskr
evltvdltttnlewlngcpppyhtfeeptyvnlk

Chain 'O':
Sequence; same for both SEQRES and ATOM records: (download)

>7cp5O (O:)
maypmqlgfqdatspimeellhfhdhtlmivflisslvlyiislmlttklthtstmdaqe
vetiwtilpaiililialpslrilymmdeinnpsltvktmghqwywsyeytdyedlsfds
ymiptselkpgelrllevdnrvvlpmemtirmlvssedvlhswavpslglktdaipgrln
qttlmssrpglyygqcseicgsnhsfmpivlelvplkyfekwsasml

Chain 'P':
Sequence; same for both SEQRES and ATOM records: (download)

>7cp5P (P:)
hqthayhmvnpspwpltgalsallmtsgltmwfhfnsmtllmiglttnmltmyqwwrdvi
restfqghhtpavqkglrygmilfiisevlfftgffwafyhsslaptpelggcwpptgih
plnplevpllntsvllasgvsitwahhslmegdrkhmlqalfititlgvyftllqaseyy
eapftisdgvygstffvatgfhglhviigstflivcffrqlkfhftsnhhfgfeaaawyw
hfvdvvwlflyvsiywwgs

Chain 'Q':
Sequence; same for both SEQRES and ATOM records: (download)

>7cp5Q (Q:)
svvksedyalpsyvdrrdyplpdvahvknlsasqkalkekekaswsslsidekvelyrlk
fkesfaemnrstnewktvvgaamffigftallliwekhyvygpiphtfeeewvakqtkrm
ldmkvapiqgfsakwdydknewkk

Chain 'R':
Sequence; same for both SEQRES and ATOM records: (download)

>7cp5R (R:)
hetdeefdarwvtyfnkpdidawelrkgmntlvgydlvpepkiidaalracrrlndfasa
vrilevvkdkagphkeiypyviqelrptlnelgistpeelgldkv

Chain 'S':
Sequence; same for both SEQRES and ATOM records: (download)

>7cp5S (S:)
asgggvptdeeqatglerevmlaarkgqdpynilapkatsgtkedpnlvpsitnkrivgc
iceednstviwfwlhkgeaqrcpscgthyklvph

Chain 'T':
Sequence; same for both SEQRES and ATOM records: (download)

>7cp5T (T:)
asaakgdhggtgartwrfltfglalpsvalctlnswlhsghrerpafipyhhlrirtkpf
swgdgnhtffhnprvnplptgyek

Chain 'U':
Sequence; same for both SEQRES and ATOM records: (download)

>7cp5U (U:)
kiknyqtapfdsrfpnqnqtrncwqnyldfhrcekamtakggdvsvcewyrrvykslcpi
swvstwddrraegtfpgki

Chain 'V':
Sequence; same for both SEQRES and ATOM records: (download)

>7cp5V (V:)
stalakpqmrgllarrlrfhivgafmvslgfatfykfavaekrkkayadfyrnydsmkdf
eemrkagifqsak

Chain 'W':
Sequence; same for both SEQRES and ATOM records: (download)

>7cp5W (W:)
fenrvaekqklfqednglpvhlkggatdnilyrvtmtlclggtlyslyclgwasfphk

Chain 'X':
Sequence; same for both SEQRES and ATOM records: (download)
```
>7cp5X (X:)
apdfhdkygnavlasgatfcvavwvymatqigiewnpspvgrvtpkewr
```
Chain 'Y':
Sequence; same for both SEQRES and ATOM records: (download)
```
>7cp5Y (Y:)
hyeegpgknipfsvenkwrllammtlffgsgfaapffivrhqllkk
```
Chain 'Z':
Sequence; same for both SEQRES and ATOM records: (download)
```
>7cp5Z (Z:)
itakpaktptspkeqaiglsvtflsfllpagwvlyhldnykks
```