PDB entry 7cm9

View 7cm9 on RCSB PDB site
Description: dmsp lyase dddx
Deposited on 2020-07-25, released 2021-05-19
The last revision was dated 2021-05-19, with a file datestamp of 2021-05-14.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DMSP lyase
    Species: Psychrobacter sp. [TaxId:56811]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CM9
  • Chain 'B':
    Compound: DMSP lyase
    Species: Psychrobacter sp. [TaxId:56811]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CM9
  • Chain 'C':
    Compound: DMSP lyase
    Species: Psychrobacter sp. [TaxId:56811]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CM9
  • Chain 'D':
    Compound: DMSP lyase
    Species: Psychrobacter sp. [TaxId:56811]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CM9
  • Heterogens: ATP, SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7cm9A (A:)
ltgqiieytikiqtiytgnfkhkngflkmiergiamkkenlkilakkaqtiaivganyrf
atrvllenldkmdftgtiylvnpryenidgvrcyqslleiedtidvvvglvnpqlmiqva
snaskinakvlvipgggygesgvegqniqnaileraadsgmrivgpncmgylnmhaqftp
yigtlhrplrpikkgpvsiisqsgsvndafiasklgiskiystgneadvqmhdylnllae
dpetsviilyieairnhlsflraldlcsknkkpviaikvgrtiksaavanahsgalagdy
eieklfleghgvlfvedidqavavalllsqpylptvntvaaltvsggqagilldlaedyg
vdfpdfsavtnyeiasklpelgglsnpldiwgksskdfsevsniclssivkdadigiitv
aidapigqgdhefdftsipakdlaslrgnsdkpflyfshiqtefdprvesildeagiavi
qgsrnalvacralfkykefleknnhtpiysvedlsiqkglkllhdnegrklldesgfvsp
reqvvtslqegvdyaesigypvvlkaqglahktdvggvalniksaaklkkawgkmehlns
pyyliqemvtdgfetilayrtdmnygpvvifglggiytelfnevvlavppithkkaeqmv
ksipmlwksiegyrgnpaldlealtasivqmgetamekyeeivefeinplsvrvkgvval
dvlasvkttaakeadaeeadvkkcselv

    Sequence, based on observed residues (ATOM records):
    >7cm9A (A:)
amkkenlkilakkaqtiaivganyrfatrvllenldkmdftgtiylvnpryenidgvrcy
qslleiedtidvvvglvnpqlmiqvasnaskinakvlvipgggygesgvegqniqnaile
raadsgmrivgpncmgylnmhaqftpyigtlhrplrpikkgpvsiisqsgsvndafiask
lgiskiystgneadvqmhdylnllaedpetsviilyieairnhlsflraldlcsknkkpv
iaikvgrtiksaavanahsgalagdyeieklfleghgvlfvedidqavavalllsqpylp
tvntvaaltvsggqagilldlaedygvdfpdfsavtnyeiasklpelgglsnpldiwgks
skdfsevsniclssivkdadigiitvaidapigqgdhefdftsipakdlaslrgnsdkpf
lyfshiqtefdprvesildeagiaviqgsrnalvacralfkykefleknnhtpiysvedl
siqkglkllhdnegrklldesgfvspreqvvtslqegvdyaesigypvvlkaqglahktd
vggvalniksaaklkkawgkmehlnspyyliqemvtdgfetilayrtdmnygpvvifglg
giytelfnevvlavppithkkaeqmvksipmlwksiegyrgnpaldlealtasivqmget
amekyeeivefeinplsvrvkgvvaldvlasvk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7cm9B (B:)
ltgqiieytikiqtiytgnfkhkngflkmiergiamkkenlkilakkaqtiaivganyrf
atrvllenldkmdftgtiylvnpryenidgvrcyqslleiedtidvvvglvnpqlmiqva
snaskinakvlvipgggygesgvegqniqnaileraadsgmrivgpncmgylnmhaqftp
yigtlhrplrpikkgpvsiisqsgsvndafiasklgiskiystgneadvqmhdylnllae
dpetsviilyieairnhlsflraldlcsknkkpviaikvgrtiksaavanahsgalagdy
eieklfleghgvlfvedidqavavalllsqpylptvntvaaltvsggqagilldlaedyg
vdfpdfsavtnyeiasklpelgglsnpldiwgksskdfsevsniclssivkdadigiitv
aidapigqgdhefdftsipakdlaslrgnsdkpflyfshiqtefdprvesildeagiavi
qgsrnalvacralfkykefleknnhtpiysvedlsiqkglkllhdnegrklldesgfvsp
reqvvtslqegvdyaesigypvvlkaqglahktdvggvalniksaaklkkawgkmehlns
pyyliqemvtdgfetilayrtdmnygpvvifglggiytelfnevvlavppithkkaeqmv
ksipmlwksiegyrgnpaldlealtasivqmgetamekyeeivefeinplsvrvkgvval
dvlasvkttaakeadaeeadvkkcselv

    Sequence, based on observed residues (ATOM records):
    >7cm9B (B:)
amkkenlkilakkaqtiaivganyrfatrvllenldkmdftgtiylvnpryenidgvrcy
qslleiedtidvvvglvnpqlmiqvasnaskinakvlvipgggygesgvegqniqnaile
raadsgmrivgpncmgylnmhaqftpyigtlhrplrpikkgpvsiisqsgsvndafiask
lgiskiystgneadvqmhdylnllaedpetsviilyieairnhlsflraldlcsknkkpv
iaikvgrtiksaavanahsgalagdyeieklfleghgvlfvedidqavavalllsqpylp
tvntvaaltvsggqagilldlaedygvdfpdfsavtnyeiasklpelgglsnpldiwgks
skdfsevsniclssivkdadigiitvaidapigqgdhefdftsipakdlaslrgnsdkpf
lyfshiqtefdprvesildeagiaviqgsrnalvacralfkykefleknnhtpiysvedl
siqkglkllhdnegrklldesgfvspreqvvtslqegvdyaesigypvvlkaqglahktd
vggvalniksaaklkkawgkmehlnspyyliqemvtdgfetilayrtdmnygpvvifglg
giytelfnevvlavppithkkaeqmvksipmlwksiegyrgnpaldlealtasivqmget
amekyeeivefeinplsvrvkgvvaldvlasvk

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7cm9C (C:)
ltgqiieytikiqtiytgnfkhkngflkmiergiamkkenlkilakkaqtiaivganyrf
atrvllenldkmdftgtiylvnpryenidgvrcyqslleiedtidvvvglvnpqlmiqva
snaskinakvlvipgggygesgvegqniqnaileraadsgmrivgpncmgylnmhaqftp
yigtlhrplrpikkgpvsiisqsgsvndafiasklgiskiystgneadvqmhdylnllae
dpetsviilyieairnhlsflraldlcsknkkpviaikvgrtiksaavanahsgalagdy
eieklfleghgvlfvedidqavavalllsqpylptvntvaaltvsggqagilldlaedyg
vdfpdfsavtnyeiasklpelgglsnpldiwgksskdfsevsniclssivkdadigiitv
aidapigqgdhefdftsipakdlaslrgnsdkpflyfshiqtefdprvesildeagiavi
qgsrnalvacralfkykefleknnhtpiysvedlsiqkglkllhdnegrklldesgfvsp
reqvvtslqegvdyaesigypvvlkaqglahktdvggvalniksaaklkkawgkmehlns
pyyliqemvtdgfetilayrtdmnygpvvifglggiytelfnevvlavppithkkaeqmv
ksipmlwksiegyrgnpaldlealtasivqmgetamekyeeivefeinplsvrvkgvval
dvlasvkttaakeadaeeadvkkcselv

    Sequence, based on observed residues (ATOM records):
    >7cm9C (C:)
amkkenlkilakkaqtiaivganyrfatrvllenldkmdftgtiylvnpryenidgvrcy
qslleiedtidvvvglvnpqlmiqvasnaskinakvlvipgggygesgvegqniqnaile
raadsgmrivgpncmgylnmhaqftpyigtlhrplrpikkgpvsiisqsgsvndafiask
lgiskiystgneadvqmhdylnllaedpetsviilyieairnhlsflraldlcsknkkpv
iaikvgrtiksaavanahsgalagdyeieklfleghgvlfvedidqavavalllsqpylp
tvntvaaltvsggqagilldlaedygvdfpdfsavtnyeiasklpelgglsnpldiwgks
skdfsevsniclssivkdadigiitvaidapigqgdhefdftsipakdlaslrgnsdkpf
lyfshiqtefdprvesildeagiaviqgsrnalvacralfkykefleknnhtpiysvedl
siqkglkllhdnegrklldesgfvspreqvvtslqegvdyaesigypvvlkaqglahktd
vggvalniksaaklkkawgkmehlnspyyliqemvtdgfetilayrtdmnygpvvifglg
giytelfnevvlavppithkkaeqmvksipmlwksiegyrgnpaldlealtasivqmget
amekyeeivefeinplsvrvkgvvaldvlasvk

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7cm9D (D:)
ltgqiieytikiqtiytgnfkhkngflkmiergiamkkenlkilakkaqtiaivganyrf
atrvllenldkmdftgtiylvnpryenidgvrcyqslleiedtidvvvglvnpqlmiqva
snaskinakvlvipgggygesgvegqniqnaileraadsgmrivgpncmgylnmhaqftp
yigtlhrplrpikkgpvsiisqsgsvndafiasklgiskiystgneadvqmhdylnllae
dpetsviilyieairnhlsflraldlcsknkkpviaikvgrtiksaavanahsgalagdy
eieklfleghgvlfvedidqavavalllsqpylptvntvaaltvsggqagilldlaedyg
vdfpdfsavtnyeiasklpelgglsnpldiwgksskdfsevsniclssivkdadigiitv
aidapigqgdhefdftsipakdlaslrgnsdkpflyfshiqtefdprvesildeagiavi
qgsrnalvacralfkykefleknnhtpiysvedlsiqkglkllhdnegrklldesgfvsp
reqvvtslqegvdyaesigypvvlkaqglahktdvggvalniksaaklkkawgkmehlns
pyyliqemvtdgfetilayrtdmnygpvvifglggiytelfnevvlavppithkkaeqmv
ksipmlwksiegyrgnpaldlealtasivqmgetamekyeeivefeinplsvrvkgvval
dvlasvkttaakeadaeeadvkkcselv

    Sequence, based on observed residues (ATOM records):
    >7cm9D (D:)
mkkenlkilakkaqtiaivganyrfatrvllenldkmdftgtiylvnpryenidgvrcyq
slleiedtidvvvglvnpqlmiqvasnaskinakvlvipgggygesgvegqniqnailer
aadsgmrivgpncmgylnmhaqftpyigtlhrplrpikkgpvsiisqsgsvndafiaskl
giskiystgneadvqmhdylnllaedpetsviilyieairnhlsflraldlcsknkkpvi
aikvgrtiksaavanahsgalagdyeieklfleghgvlfvedidqavavalllsqpylpt
vntvaaltvsggqagilldlaedygvdfpdfsavtnyeiasklpelgglsnpldiwgkss
kdfsevsniclssivkdadigiitvaidapigqgdhefdftsipakdlaslrgnsdkpfl
yfshiqtefdprvesildeagiaviqgsrnalvacralfkykefleknnhtpiysvedls
iqkglkllhdnegrklldesgfvspreqvvtslqegvdyaesigypvvlkaqglahktdv
ggvalniksaaklkkawgkmehlnspyyliqemvtdgfetilayrtdmnygpvvifglgg
iytelfnevvlavppithkkaeqmvksipmlwksiegyrgnpaldlealtasivqmgeta
mekyeeivefeinplsvrvkgvvaldvlasvk