PDB entry 7cl6

View 7cl6 on RCSB PDB site
Description: the crystal structure of kanj in complex with neamine and n- oxalylglycine
Deposited on 2020-07-20, released 2021-01-13
The last revision was dated 2021-05-12, with a file datestamp of 2021-05-07.
Experiment type: XRAY
Resolution: 2.44 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Kanamycin B dioxygenase
    Species: Streptomyces kanamyceticus [TaxId:1967]
    Gene: kanJ, kacB
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6L732 (16-End)
      • expression tag (15)
  • Chain 'B':
    Compound: Kanamycin B dioxygenase
    Species: Streptomyces kanamyceticus [TaxId:1967]
    Gene: kanJ, kacB
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Kanamycin B dioxygenase
    Species: Streptomyces kanamyceticus [TaxId:1967]
    Gene: kanJ, kacB
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6L732 (16-End)
      • expression tag (15)
  • Chain 'D':
    Compound: Kanamycin B dioxygenase
    Species: Streptomyces kanamyceticus [TaxId:1967]
    Gene: kanJ, kacB
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6L732 (16-End)
      • expression tag (15)
  • Chain 'E':
    Compound: Kanamycin B dioxygenase
    Species: Streptomyces kanamyceticus [TaxId:1967]
    Gene: kanJ, kacB
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6L732 (16-End)
      • expression tag (15)
  • Chain 'F':
    Compound: Kanamycin B dioxygenase
    Species: Streptomyces kanamyceticus [TaxId:1967]
    Gene: kanJ, kacB
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6L732 (16-End)
      • expression tag (15)
  • Heterogens: NI, OGA, XXX, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7cl6A (A:)
mnhkvhhhhhhiegrhmalaappgeltlaltpddktldpasldralailaehgilvltgm
lrtrltdqlrtamlddlpevlrqqdvptnfvpghvqqdppvresllfpdvllnpvvyqit
havlgadarnavysgnmnlpgsheqpvhldephlwpgishppyclcvdvplidftlengs
teywpgshvlnpdecydergcvlpaelerrravappvrfpipvgsvvirdgrlwhrgvpn
lsaaprpllamthytewfdmppiqlpdtvkswvdgsdrhthahfvagdvdhltgdhpfav
r

    Sequence, based on observed residues (ATOM records):
    >7cl6A (A:)
hmalaappgeltlaltpddktldpasldralailaehgilvltgmlrtrltdqlrtamld
dlpevlrqqdvptnfvpghvqqdppvresllfpdvllnpvvyqithavlgadarnavysg
nmnlpgsheqpvhldephlwpgishppyclcvdvplidftlengsteywpgshvlnpdec
ydergcvlpaelerrravappvrfpipvgsvvirdgrlwhrgvpnlsaaprpllamthyt
ewfdmppiqlpdtvkswvdgsdrhthahfvagdvdhldhpfav

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7cl6B (B:)
mnhkvhhhhhhiegrhmalaappgeltlaltpddktldpasldralailaehgilvltgm
lrtrltdqlrtamlddlpevlrqqdvptnfvpghvqqdppvresllfpdvllnpvvyqit
havlgadarnavysgnmnlpgsheqpvhldephlwpgishppyclcvdvplidftlengs
teywpgshvlnpdecydergcvlpaelerrravappvrfpipvgsvvirdgrlwhrgvpn
lsaaprpllamthytewfdmppiqlpdtvkswvdgsdrhthahfvagdvdhltgdhpfav
r

    Sequence, based on observed residues (ATOM records):
    >7cl6B (B:)
alaappgeltlaltpddktldpasldralailaehgilvltgmlrtrltdqlrtamlddl
pevlrqqdvptnfvpghvqqdppvresllfpdvllnpvvyqithavlgadarnavysgnm
nlpgsheqpvhldephlwpgishppyclcvdvplidftlengsteywpgshvlnpdecyd
ergcvlpaelerrravappvrfpipvgsvvirdgrlwhrgvpnlsaaprpllamthytew
fdmppiqlpdtvkswvdgsdrhthahfvagdvdhltgdhpf

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7cl6C (C:)
mnhkvhhhhhhiegrhmalaappgeltlaltpddktldpasldralailaehgilvltgm
lrtrltdqlrtamlddlpevlrqqdvptnfvpghvqqdppvresllfpdvllnpvvyqit
havlgadarnavysgnmnlpgsheqpvhldephlwpgishppyclcvdvplidftlengs
teywpgshvlnpdecydergcvlpaelerrravappvrfpipvgsvvirdgrlwhrgvpn
lsaaprpllamthytewfdmppiqlpdtvkswvdgsdrhthahfvagdvdhltgdhpfav
r

    Sequence, based on observed residues (ATOM records):
    >7cl6C (C:)
hmalaappgeltlaltpddktldpasldralailaehgilvltgmlrtrltdqlrtamld
dlpevlrqqdvptnfvpghvqqdppvresllfpdvllnpvvyqithavlgadarnavysg
nmnlpgsheqpvhldephlwpgishppyclcvdvplidftlengsteywpgshvlnpdec
ydergcvlpaelerrravappvrfpipvgsvvirdgrlwhrgvpnlsaaprpllamthyt
ewfdmppiqlpdtvkswvdgsdrhthahfvagdvdhpfav

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7cl6D (D:)
mnhkvhhhhhhiegrhmalaappgeltlaltpddktldpasldralailaehgilvltgm
lrtrltdqlrtamlddlpevlrqqdvptnfvpghvqqdppvresllfpdvllnpvvyqit
havlgadarnavysgnmnlpgsheqpvhldephlwpgishppyclcvdvplidftlengs
teywpgshvlnpdecydergcvlpaelerrravappvrfpipvgsvvirdgrlwhrgvpn
lsaaprpllamthytewfdmppiqlpdtvkswvdgsdrhthahfvagdvdhltgdhpfav
r

    Sequence, based on observed residues (ATOM records):
    >7cl6D (D:)
hmalaappgeltlaltpddktldpasldralailaehgilvltgmlrtrltdqlrtamld
dlpevlrqqdvptnfvpghvqqdppvresllfpdvllnpvvyqithavlgadarnavysg
nmnlpgsheqpvhldephlwpgishppyclcvdvplidftlengsteywpgshvlnpdec
ydergcvlpaelerrravappvrfpipvgsvvirdgrlwhrgvpnlsaaprpllamthyt
ewfdmppiqlpdtvkswvdgsdrhthahfvagdvdhl

  • Chain 'E':
    Sequence, based on SEQRES records:
    >7cl6E (E:)
mnhkvhhhhhhiegrhmalaappgeltlaltpddktldpasldralailaehgilvltgm
lrtrltdqlrtamlddlpevlrqqdvptnfvpghvqqdppvresllfpdvllnpvvyqit
havlgadarnavysgnmnlpgsheqpvhldephlwpgishppyclcvdvplidftlengs
teywpgshvlnpdecydergcvlpaelerrravappvrfpipvgsvvirdgrlwhrgvpn
lsaaprpllamthytewfdmppiqlpdtvkswvdgsdrhthahfvagdvdhltgdhpfav
r

    Sequence, based on observed residues (ATOM records):
    >7cl6E (E:)
hmalaappgeltlaltpddktldpasldralailaehgilvltgmlrtrltdqlrtamld
dlpevlrqqdvptnfvpghvqqdppvresllfpdvllnpvvyqithavlgadarnavysg
nmnlpgsheqpvhldephlwpgishppyclcvdvplidftlengsteywpgshvlnpdec
ydergcvlpaelerrravappvrfpipvgsvvirdgrlwhrgvpnlsaaprpllamthyt
ewfdmppiqlpdtvkswvdgsdrhthahfvagdvdhlhpfav

  • Chain 'F':
    Sequence, based on SEQRES records:
    >7cl6F (F:)
mnhkvhhhhhhiegrhmalaappgeltlaltpddktldpasldralailaehgilvltgm
lrtrltdqlrtamlddlpevlrqqdvptnfvpghvqqdppvresllfpdvllnpvvyqit
havlgadarnavysgnmnlpgsheqpvhldephlwpgishppyclcvdvplidftlengs
teywpgshvlnpdecydergcvlpaelerrravappvrfpipvgsvvirdgrlwhrgvpn
lsaaprpllamthytewfdmppiqlpdtvkswvdgsdrhthahfvagdvdhltgdhpfav
r

    Sequence, based on observed residues (ATOM records):
    >7cl6F (F:)
hmalaappgeltlaltpddktldpasldralailaehgilvltgmlrtrltdqlrtamld
dlpevlrqqdvptnfvpghvqqdppvresllfpdvllnpvvyqithavlgadarnavysg
nmnlpgsheqpvhldephlwpgishppyclcvdvplidftlengsteywpgshvlnpdec
ydergcvlpaelerrravappvrfpipvgsvvirdgrlwhrgvpnlsaaprpllamthyt
ewfdmppiqlpdtvkswvdgsdrhthahfvhpfav