PDB entry 7ckm

View 7ckm on RCSB PDB site
Description: structure of machupo virus polymerase bound to z matrix protein (monomeric complex)
Deposited on 2020-07-17, released 2021-05-05
The last revision was dated 2021-11-17, with a file datestamp of 2021-11-12.
Experiment type: EM
Resolution: 3.37 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA-directed RNA polymerase L
    Species: Machupo virus [TaxId:11628]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: RING finger protein Z
    Species: Machupo virus [TaxId:11628]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MN, ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7ckmA (A:)
    mdeyvqelkglirkhipercefghqkvtflsqvhpsplltegfkllsslvelesceahac
    qantdqrfvdvilsdngilcptlpkvipdgfkltgktlilletfvrvnpdefekkwkadm
    skllnlkhdlqksgvtlvpivdgrsnynnrfvadwvierirwllieilkasksmleidie
    dqeyqrlihslsnvknqslglenlehlkrnsldyderlneslfiglkgdirestvreeli
    klklwfkdevfskglgkfkltdrrelleslsslgahldsdvsscpfcnnklmeivynvtf
    scvertdgvatvdqqfstthsniekhylsvlslcnkikglkvfntrrntllfldlimvnl
    mvdisdscqdaieslrksglivgqmvmlvndrvldileavklirkkigtnpnwvkncski
    lershpeiwhhlstlikqpdfnslisiaqhlvsdrpimrysvergsdkicrhklfqemss
    feqmrlfktlssislslinsmktsfssrllvnerefskyfgnvrlrecyaqrfylaeslv
    gflfyqktgersrcysvylsdngvmseqgsfycdpkrfflpvfsdevlagmceemtswld
    fdtglmndtgpilrllvlailcspskrnqtflqglryflmafanqihhidltsklvveck
    sssevvvqrlavglfirllsgesdaslffsrrfkyllnvsylchlitketpdrltdqikc
    fekfiepkvkfgcavvnpslngkltvdqediminglkkffskslrdtedvqtpgvckell
    nycvslfnrgklkvsgelknnpfrpnitstaldlssnksvvipkldelgnilstydkekl
    vsacvssmaerfktkgrynldpdstdylilknltglvsagpkakstqeelslmyealtee
    qvesfneikhdvqvalakmadnsvntrtknlgradnsvkngnnpldnlwspfgvmkeira
    evslhevkdfdpdvlppevykelcdavykssekcnfflegvldvcplglllknlttssyv
    deeyfmcfkylliqghfdqklgsyehksrsrlgftdetlrlkdevrlsiresnseaiadk
    ldksyftnaalrnlcfysedspteftsissnsgnlkfglsykeqvgsnrelyvgdlntkl
    mtrlvedfseavgnsmkytclnsekeferaicdmkmavnngdlscsydhskwgptmspal
    flallqmlelrtpvdrskidldsvksilkwhlhkvvevpinvaeaycigklkrslglmgc
    gstslseeffhqtmqlngqipshimsvldmgqgilhntsdlygliteqflcyaldllydv
    ipvsytssddqitliktpsldieggsdaaewlemicfheflssklnkfvspksvigtfva
    efksrffvmgeetplltkfvaaalhnvkcktptqlsetidticdqciangvstkivtris
    krvnqlirysgygetpfgaiedqdvkdwvdgsrgyrlqrkieaifhddketsfirncark
    vfndikrgrifeenlinligrggdealtgflqyagcseqevnrvlnyrwvnlssfgdlrl
    vlrtklmtsrrvlereevptliktlqsklsrnftkgvkkilaesinksafqssvasgfig
    fcksmgskcvrdgkggflyikevysgvsactceicalkpkiiycnnslnkvsqfskpilw
    dyfslvltnacelgewvfstvkepqkplvlnnqnffwavkpkvvrqiedqlgmnhvlqsi
    rrnypvlfdehltpfmndlqvsrtmdsgrlkfldvcialdmmnenlgiishllktrdnsv
    yivkqsdcalahirqssytdwelglspqqictnfktqlvlssmvnplvlstsclksffwf
    nevleleddsqielaeltdfalmvknqnvsramfvediamgyvvsnfegvrislsnvmvd
    gvqlppqekapdigelfglkaenvivglvvqidhvrmstkfklkrkmvysfslecimdvg
    eiqnkevilkvvavdqsvsgsggnhmlldgvsvvaslplftgqasfdlaamliesnlags
    ndnflmrnvtldlggfspelsdkysyrlsgpenqedplvlkdgafyvggerlstykveft
    gdlvvkalgaleddesvvsmlhqlwpylkatsqvilfqqedftivhdlykkqltksiesf
    gewieftnfkvayskslkelvisdtqgsfrlkgvmcrplastpqvedie
    

    Sequence, based on observed residues (ATOM records):
    >7ckmA (A:)
    deyvqelkglirkhipercefghqkvtflsqvhpsplltegfkllsslvelesceahacq
    antdqrfvdvilsdngilcptlpkvipdgfkltgktlilletfvrvnpdefekkwkadms
    kllnlkhdlqksgvtlvpivdgrsnynnrfvadwvierirwllieilkasksedqeyqrl
    ihslsnvklenlehlkrnsldyderlneslfiglkgdirestvreeliklklwfkdevfs
    kglgkfkltdrrelleslsslgahldsdvsscpfcnnklmeivynvtfscversniekhy
    lsvlslcnkikglkvfntrrntllfldlimvnlmvdisdscqdaieslrksglivgqmvm
    lvndrvldileavklirkkigtnpnwvkncskilershpeiwhhlstlikqpdfnslisi
    aqhlvsdrpimryskicrhklfqemssfeqmrlfktlssislslinsmktsfssrllvne
    fgnvrlrecyaqrfylaeslvgflfyqktgersrcysvylsdngvmseqgsfycdpkrff
    lpvfsdevlagmceemtswldfdtglmndtgpilrllvlailcspskrnqtflqglryfl
    mafanqihhidltsklvvecksssevvvqrlavglfirllsgesdaslffsrrfkyllnv
    sylchlitketpdrltdqikcfekfiepkvkfgcavvnpslngkltvdqediminglkkf
    fskslrdtedvqtpgvckellnycvslfnrgklkvsgelknnpfripkldelgnilstyd
    keklvsacvssmaerfknldpdstdylilknlttqeelslmyealteeqvesfneikhdv
    qvalakmadvslhevkdfdpdvlppevykelcdavykssekcnfflegvldvcplglllk
    nlttssyvdeeyfmcfkylliqghfdqftnaalrnlcfysedspteftsissnsgnlkfg
    lsykeqvgsnrelyvgdlntklmtrlvedfseavgnsmkytclnsekeferaicdmkmav
    nngdlscsydhskwgptmspalflallqmlelrtpvdrskidldsvksilkwhlhkvvev
    pinvaeaycigstslseeffhqtmqlngqipshimsvldmgqgilhntsdlygliteqfl
    cyaldllydvipvsytssddqitliktpsdaaewlemicfheflssklnkfvspksvigt
    fvaefksrffvmgeetplltkfvaaalhnvkcktptqlsetidticdqciangvstkivt
    riskrvnqlirysgygetpfgaiedqdvkdwvdgsrgyrlqrkieaifhddketsfirnc
    arkvfndikrgrifeenlinligrggdealtgflqyagcseqevnrvlnyrwvnlssfgd
    lrlvlrtklmtvptliktlqsklsrqssvasgfigfcksmgskcvrdggflyikevysgv
    sactceicalkpkiiycnnslnkvsqfskpilwdyfslvltnacelgewvfstvkepqnn
    qnffwavkpkvvrqiedqlgmnhvlqsirrnypvlfdehltpfmndlqvsrtmdsgrlkf
    ldvcialdmmnenlgiishllktrdnsvyivkqsdcalahirq
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7ckmB (B:)
    mgncnkppkrppntqtssnqpsaefrrtappslygrynckccwfadtnlitcndhylclr
    chqtmlrnselchicwkplptsitvpvepsappp
    

    Sequence, based on observed residues (ATOM records):
    >7ckmB (B:)
    lygrynckccwfadtnlitcndhylclrchqtmlrnselchicwkplpt