PDB entry 7cjd

View 7cjd on RCSB PDB site
Description: Crystal structure of the SARS-CoV-2 PLpro C111S mutant
Class: hydrolase
Keywords: Proteinase;drug target;, HYDROLASE
Deposited on 2020-07-10, released 2020-09-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-03-10, with a file datestamp of 2021-03-05.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: non-structural protein 3
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: rep, 1a-1b
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTD1
      • engineered mutation (111)
    Domains in SCOPe 2.08: d7cjda1, d7cjda2
  • Chain 'B':
    Compound: non-structural protein 3
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: rep, 1a-1b
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTD1
      • engineered mutation (111)
    Domains in SCOPe 2.08: d7cjdb1, d7cjdb2
  • Chain 'C':
    Compound: non-structural protein 3
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: rep, 1a-1b
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTD1
      • engineered mutation (111)
    Domains in SCOPe 2.08: d7cjdc1, d7cjdc2
  • Chain 'D':
    Compound: non-structural protein 3
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: rep, 1a-1b
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTD1 (1-End)
      • engineered mutation (111)
    Domains in SCOPe 2.08: d7cjdd1, d7cjdd2
  • Heterogens: ZN, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7cjdA (A:)
mevrtikvfttvdninlhtqvvdmsmtygqqfgptyldgadvtkikphnshegktfyvlp
nddtlrveafeyyhttdpsflgrymsalnhtkkwkypqvngltsikwadnnsylatallt
lqqielkfnppalqdayyrarageaanfcalilaycnktvgelgdvretmsylfqhanld
sckrvlnvvcktcgqqqttlkgveavmymgtlsyeqfkkgvqipctcgkqatkylvqqes
pfvmmsappaqyelkhgtftcaseytgnyqcghykhitsketlycidgalltksseykgp
itdvfykensytttikpvthhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7cjdA (A:)
kvfttvdninlhtqvvqfgptyldgadvtkihnshegktfyvlpnddtlrveafeyyhtt
dpsflgrymsalnhtkkwkypqvngltsikwadnnsylatalltlqqielkfnppalqda
yyrarageaanfcalilaycnktvgelgdvretmsylfqhanldsckrvlnvvcktcgqq
qttlkgveavmymgtlsyeqfkkgvqipctcgkqatkylvqqespfvmmsappaqyelkh
gtftcaseytgnyqcghykhitsketlycidgalltksseykgpitdvfykensytt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7cjdB (B:)
mevrtikvfttvdninlhtqvvdmsmtygqqfgptyldgadvtkikphnshegktfyvlp
nddtlrveafeyyhttdpsflgrymsalnhtkkwkypqvngltsikwadnnsylatallt
lqqielkfnppalqdayyrarageaanfcalilaycnktvgelgdvretmsylfqhanld
sckrvlnvvcktcgqqqttlkgveavmymgtlsyeqfkkgvqipctcgkqatkylvqqes
pfvmmsappaqyelkhgtftcaseytgnyqcghykhitsketlycidgalltksseykgp
itdvfykensytttikpvthhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7cjdB (B:)
vrtikvfttvdninlhtqvvdmsmtygqqfgptyldgadvtkikphnshegktfyvlpnd
dtlrveafeyyhttdpsflgrymsalnhtkkwkypqvngltsikwadnnsylatalltlq
qielkfnppalqdayyrarageaanfcalilaycnktvgelgdvretmsylfqhanldsc
krvlnvvcktcgqqqttlkgveavmymgtlsyeqfkkgvqipctcgkqatkylvqqespf
vmmsappaqyelkhgtftcaseytgnyqcghykhitsketlycidgalltksseykgpit
dvfykensytt

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7cjdC (C:)
mevrtikvfttvdninlhtqvvdmsmtygqqfgptyldgadvtkikphnshegktfyvlp
nddtlrveafeyyhttdpsflgrymsalnhtkkwkypqvngltsikwadnnsylatallt
lqqielkfnppalqdayyrarageaanfcalilaycnktvgelgdvretmsylfqhanld
sckrvlnvvcktcgqqqttlkgveavmymgtlsyeqfkkgvqipctcgkqatkylvqqes
pfvmmsappaqyelkhgtftcaseytgnyqcghykhitsketlycidgalltksseykgp
itdvfykensytttikpvthhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7cjdC (C:)
rtikvfttvdninlhtqvvdmsmtygqqfgptyldgadvtkikphnshegktfyvlpndd
tlrveafeyyhttdpsflgrymsalnhtkkwkypqvngltsikwadnnsylatalltlqq
ielkfnppalqdayyrarageaanfcalilaycnktvgelgdvretmsylfqhanldsck
rvlnvvcktcgqqqttlkgveavmymgtlsyeqfkkgvqipctcgkqatkylvqqespfv
mmsappaqyelkhgtftcaseytgnyqcghykhitsketlycidgalltksseykgpitd
vfykensytt

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7cjdD (D:)
mevrtikvfttvdninlhtqvvdmsmtygqqfgptyldgadvtkikphnshegktfyvlp
nddtlrveafeyyhttdpsflgrymsalnhtkkwkypqvngltsikwadnnsylatallt
lqqielkfnppalqdayyrarageaanfcalilaycnktvgelgdvretmsylfqhanld
sckrvlnvvcktcgqqqttlkgveavmymgtlsyeqfkkgvqipctcgkqatkylvqqes
pfvmmsappaqyelkhgtftcaseytgnyqcghykhitsketlycidgalltksseykgp
itdvfykensytttikpvthhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7cjdD (D:)
evrtikvfttvdninlhtqvvdmsmtygqqfgptyldgadvtkikphnshegktfyvlpn
ddtlrveafeyyhttdpsflgrymsalnhtkkwkypqvngltsikwadnnsylatalltl
qqielkfnppalqdayyrarageaanfcalilaycnktvgelgdvretmsylfqhanlds
ckrvlnvvcktcgqqqttlkgveavmymgtlsyeqfkkgvqipctcgkqatkylvqqesp
fvmmsappaqyelkhgtftcaseytgnyqcghykhitsketlycidgalltksseykgpi
tdvfykensyttt