PDB entry 7cj8

View 7cj8 on RCSB PDB site
Description: crystal structure of n-terminal his-tagged d-allulose 3-epimerase from methylomonas sp. in complex with d-allulose
Deposited on 2020-07-09, released 2021-04-21
The last revision was dated 2021-06-09, with a file datestamp of 2021-06-04.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Epimerase
    Species: Methylomonas sp. DH-1 [TaxId:1727196]
    Gene: AYM39_05640
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Epimerase
    Species: Methylomonas sp. DH-1 [TaxId:1727196]
    Gene: AYM39_05640
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Epimerase
    Species: Methylomonas sp. DH-1 [TaxId:1727196]
    Gene: AYM39_05640
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Epimerase
    Species: Methylomonas sp. DH-1 [TaxId:1727196]
    Gene: AYM39_05640
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A172U6X0 (21-306)
      • expression tag (19-20)
  • Chain 'E':
    Compound: Epimerase
    Species: Methylomonas sp. DH-1 [TaxId:1727196]
    Gene: AYM39_05640
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Epimerase
    Species: Methylomonas sp. DH-1 [TaxId:1727196]
    Gene: AYM39_05640
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MN, EPE, PSJ, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7cj8A (A:)
mgsshhhhhhssglvprgshsmafpkrleygghalvwsgdwsaagarkaiagaaragydy
ieialldpwqidvaltkdllqeynlrahaslglsaatdvtstdpaivakgdellrkatdv
lyalggselcgviycalgkypgpasrenransvaamqrladyaadkginidlevvnryet
nimntgleglafldevnrpnaflhldtyhmnieengmaksvlaagdrlgyvhigeshrgy
lgtgnvdfasffaalkqidyrgpitfesfsseivdpklsntlcvwrnlwhdsddlagkal
efikqry

    Sequence, based on observed residues (ATOM records):
    >7cj8A (A:)
smafpkrleygghalvwsgdwsaagarkaiagaaragydyieialldpwqidvaltkdll
qeynlrahaslglsaatdvtstdpaivakgdellrkatdvlyalggselcgviycalgky
pgpasrenransvaamqrladyaadkginidlevvnryetnimntgleglafldevnrpn
aflhldtyhmnieengmaksvlaagdrlgyvhigeshrgylgtgnvdfasffaalkqidy
rgpitfesfsseivdpklsntlcvwrnlwhdsddlagkalefikqry

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7cj8B (B:)
mgsshhhhhhssglvprgshsmafpkrleygghalvwsgdwsaagarkaiagaaragydy
ieialldpwqidvaltkdllqeynlrahaslglsaatdvtstdpaivakgdellrkatdv
lyalggselcgviycalgkypgpasrenransvaamqrladyaadkginidlevvnryet
nimntgleglafldevnrpnaflhldtyhmnieengmaksvlaagdrlgyvhigeshrgy
lgtgnvdfasffaalkqidyrgpitfesfsseivdpklsntlcvwrnlwhdsddlagkal
efikqry

    Sequence, based on observed residues (ATOM records):
    >7cj8B (B:)
smafpkrleygghalvwsgdwsaagarkaiagaaragydyieialldpwqidvaltkdll
qeynlrahaslglsaatdvtstdpaivakgdellrkatdvlyalggselcgviycalgky
pgpasrenransvaamqrladyaadkginidlevvnryetnimntgleglafldevnrpn
aflhldtyhmnieengmaksvlaagdrlgyvhigeshrgylgtgnvdfasffaalkqidy
rgpitfesfsseivdpklsntlcvwrnlwhdsddlagkalefikqry

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7cj8C (C:)
mgsshhhhhhssglvprgshsmafpkrleygghalvwsgdwsaagarkaiagaaragydy
ieialldpwqidvaltkdllqeynlrahaslglsaatdvtstdpaivakgdellrkatdv
lyalggselcgviycalgkypgpasrenransvaamqrladyaadkginidlevvnryet
nimntgleglafldevnrpnaflhldtyhmnieengmaksvlaagdrlgyvhigeshrgy
lgtgnvdfasffaalkqidyrgpitfesfsseivdpklsntlcvwrnlwhdsddlagkal
efikqry

    Sequence, based on observed residues (ATOM records):
    >7cj8C (C:)
smafpkrleygghalvwsgdwsaagarkaiagaaragydyieialldpwqidvaltkdll
qeynlrahaslglsaatdvtstdpaivakgdellrkatdvlyalggselcgviycalgky
pgpasrenransvaamqrladyaadkginidlevvnryetnimntgleglafldevnrpn
aflhldtyhmnieengmaksvlaagdrlgyvhigeshrgylgtgnvdfasffaalkqidy
rgpitfesfsseivdpklsntlcvwrnlwhdsddlagkalefikqry

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7cj8D (D:)
mgsshhhhhhssglvprgshsmafpkrleygghalvwsgdwsaagarkaiagaaragydy
ieialldpwqidvaltkdllqeynlrahaslglsaatdvtstdpaivakgdellrkatdv
lyalggselcgviycalgkypgpasrenransvaamqrladyaadkginidlevvnryet
nimntgleglafldevnrpnaflhldtyhmnieengmaksvlaagdrlgyvhigeshrgy
lgtgnvdfasffaalkqidyrgpitfesfsseivdpklsntlcvwrnlwhdsddlagkal
efikqry

    Sequence, based on observed residues (ATOM records):
    >7cj8D (D:)
hsmafpkrleygghalvwsgdwsaagarkaiagaaragydyieialldpwqidvaltkdl
lqeynlrahaslglsaatdvtstdpaivakgdellrkatdvlyalggselcgviycalgk
ypgpasrenransvaamqrladyaadkginidlevvnryetnimntgleglafldevnrp
naflhldtyhmnieengmaksvlaagdrlgyvhigeshrgylgtgnvdfasffaalkqid
yrgpitfesfsseivdpklsntlcvwrnlwhdsddlagkalefikqry

  • Chain 'E':
    Sequence, based on SEQRES records:
    >7cj8E (E:)
mgsshhhhhhssglvprgshsmafpkrleygghalvwsgdwsaagarkaiagaaragydy
ieialldpwqidvaltkdllqeynlrahaslglsaatdvtstdpaivakgdellrkatdv
lyalggselcgviycalgkypgpasrenransvaamqrladyaadkginidlevvnryet
nimntgleglafldevnrpnaflhldtyhmnieengmaksvlaagdrlgyvhigeshrgy
lgtgnvdfasffaalkqidyrgpitfesfsseivdpklsntlcvwrnlwhdsddlagkal
efikqry

    Sequence, based on observed residues (ATOM records):
    >7cj8E (E:)
smafpkrleygghalvwsgdwsaagarkaiagaaragydyieialldpwqidvaltkdll
qeynlrahaslglsaatdvtstdpaivakgdellrkatdvlyalggselcgviycalgky
pgpasrenransvaamqrladyaadkginidlevvnryetnimntgleglafldevnrpn
aflhldtyhmnieengmaksvlaagdrlgyvhigeshrgylgtgnvdfasffaalkqidy
rgpitfesfsseivdpklsntlcvwrnlwhdsddlagkalefikqry

  • Chain 'F':
    Sequence, based on SEQRES records:
    >7cj8F (F:)
mgsshhhhhhssglvprgshsmafpkrleygghalvwsgdwsaagarkaiagaaragydy
ieialldpwqidvaltkdllqeynlrahaslglsaatdvtstdpaivakgdellrkatdv
lyalggselcgviycalgkypgpasrenransvaamqrladyaadkginidlevvnryet
nimntgleglafldevnrpnaflhldtyhmnieengmaksvlaagdrlgyvhigeshrgy
lgtgnvdfasffaalkqidyrgpitfesfsseivdpklsntlcvwrnlwhdsddlagkal
efikqry

    Sequence, based on observed residues (ATOM records):
    >7cj8F (F:)
smafpkrleygghalvwsgdwsaagarkaiagaaragydyieialldpwqidvaltkdll
qeynlrahaslglsaatdvtstdpaivakgdellrkatdvlyalggselcgviycalgky
pgpasrenransvaamqrladyaadkginidlevvnryetnimntgleglafldevnrpn
aflhldtyhmnieengmaksvlaagdrlgyvhigeshrgylgtgnvdfasffaalkqidy
rgpitfesfsseivdpklsntlcvwrnlwhdsddlagkalefikqry