PDB entry 7che

View 7che on RCSB PDB site
Description: crystal structure of the sars-cov-2 rbd in complex with bd-236 fab and bd-368-2 fab
Deposited on 2020-07-05, released 2020-09-16
The last revision was dated 2021-03-10, with a file datestamp of 2021-03-05.
Experiment type: XRAY
Resolution: 3.42 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: BD-368-2 Fab heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CHE
  • Chain 'B':
    Compound: BD-368-2 Fab light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CHE (0-End)
  • Chain 'H':
    Compound: BD-236 Fab heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CHE (0-End)
  • Chain 'L':
    Compound: BD-236 Fab light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CHE
  • Chain 'R':
    Compound: Spike protein S1
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7cheA (A:)
    evqllesgggvvqpggslrlscaasgfafttyamnwvrqapgrglewvsaisdgggsayy
    adsvkgrftisrdnskntlylqmnslraedtavyycaktrgrglydyvwgskdywgqgtl
    vtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpa
    vlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdk
    

    Sequence, based on observed residues (ATOM records):
    >7cheA (A:)
    vqllesgggvvqpggslrlscaasgfafttyamnwvrqapgrglewvsaisdgggsayya
    dsvkgrftisrdnskntlylqmnslraedtavyycaktrgrglydyvwgskdywgqgtlv
    tvssastkgpsvfplapgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgly
    slssvvtvpssslgtqtyicnvnhkpsntkvdkkvepks
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7cheB (B:)
    divmtqsplslpvtpgepasiscrssqsllhsngynyldwylqkpgqspqlliylgsnra
    sgvpdrfsgsgsgtdftlkisrveaedvgvyycmqalqtpgtfgqgtrleikrtvaapsv
    fifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysl
    sstltlskadyekhkvyacevthqglsspvtksfnrgec
    

    Sequence, based on observed residues (ATOM records):
    >7cheB (B:)
    divmtqsplslpvtpgepasiscrssqsllhsngynyldwylqkpgqspqlliylgsnra
    sgvpdrfsgsgsgtdftlkisrveaedvgvyycmqalqtpgtfgqgtrleikrtvaapsv
    fifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysl
    sstltlskadyekhkvyacevthqglsspvtksfnr
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >7cheH (H:)
    evqlvesgggliqpggslrlscaasgitvssnymswvrqapgkglewvsviysggstdya
    dsvkgrftisrdkskntlylqmnslraedtavyycardlgeaggmdvwgqgttvtvssas
    tkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgl
    yslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdk
    

    Sequence, based on observed residues (ATOM records):
    >7cheH (H:)
    evqlvesgggliqpggslrlscaasgitvssnymswvrqapgkglewvsviysggstdya
    dsvkgrftisrdkskntlylqmnslraedtavyycardlgeaggmdvwgqgttvtvssas
    tkgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglyslssv
    vtvpssslgtqtyicnvnhkpsntkvdkkvep
    

  • Chain 'L':
    Sequence, based on SEQRES records:
    >7cheL (L:)
    aiqltqspsslsasvgdrvtitcrasqgissylawyqqkpgkapklliyaastlqsgvps
    rfsgsgsgtdftltisslqpedfatyycqqlnsyppafgggtkveikrtvaapsvfifpp
    sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
    lskadyekhkvyacevthqglsspvtksfnrgec
    

    Sequence, based on observed residues (ATOM records):
    >7cheL (L:)
    iqltqspsslsasvgdrvtitcrasqgissylawyqqkpgkapklliyaastlqsgvpsr
    fsgsgsgtdftltisslqpedfatyycqqlnsyppafgggtkveikrtvaapsvfifpps
    deqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltl
    skadyekhkvyacevthqglsspvtksfnrg
    

  • Chain 'R':
    Sequence, based on SEQRES records:
    >7cheR (R:)
    rvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfk
    cygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawns
    nnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfq
    ptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnf
    

    Sequence, based on observed residues (ATOM records):
    >7cheR (R:)
    tnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcf
    tnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyl
    yrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvv
    lsfeatvcg