PDB entry 7cd2

View 7cd2 on RCSB PDB site
Description: Crystal structure of the S103F mutant of Bacillus subtilis (natto) YabJ protein.
Class: unknown function
Keywords: Mutant, Homotetramer, UNKNOWN FUNCTION
Deposited on 2020-06-18, released 2021-03-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-03-03, with a file datestamp of 2021-02-26.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: YabJ protein
    Species: Bacillus subtilis subsp. natto (strain BEST195) [TaxId:645657]
    Gene: yabJ, BSNT_00084
    Database cross-references and differences (RAF-indexed):
    • Uniprot D4G3D4 (Start-124)
      • engineered mutation (102)
    Domains in SCOPe 2.08: d7cd2a_
  • Chain 'B':
    Compound: YabJ protein
    Species: Bacillus subtilis subsp. natto (strain BEST195) [TaxId:645657]
    Gene: yabJ, BSNT_00084
    Database cross-references and differences (RAF-indexed):
    • Uniprot D4G3D4 (Start-124)
      • engineered mutation (102)
    Domains in SCOPe 2.08: d7cd2b_
  • Chain 'C':
    Compound: YabJ protein
    Species: Bacillus subtilis subsp. natto (strain BEST195) [TaxId:645657]
    Gene: yabJ, BSNT_00084
    Database cross-references and differences (RAF-indexed):
    • Uniprot D4G3D4 (Start-124)
      • engineered mutation (102)
    Domains in SCOPe 2.08: d7cd2c_
  • Chain 'D':
    Compound: YabJ protein
    Species: Bacillus subtilis subsp. natto (strain BEST195) [TaxId:645657]
    Gene: yabJ, BSNT_00084
    Database cross-references and differences (RAF-indexed):
    • Uniprot D4G3D4 (Start-124)
      • engineered mutation (102)
    Domains in SCOPe 2.08: d7cd2d_
  • Chain 'E':
    Compound: YabJ protein
    Species: Bacillus subtilis subsp. natto (strain BEST195) [TaxId:645657]
    Gene: yabJ, BSNT_00084
    Database cross-references and differences (RAF-indexed):
    • Uniprot D4G3D4 (Start-124)
      • engineered mutation (102)
    Domains in SCOPe 2.08: d7cd2e_
  • Chain 'F':
    Compound: YabJ protein
    Species: Bacillus subtilis subsp. natto (strain BEST195) [TaxId:645657]
    Gene: yabJ, BSNT_00084
    Database cross-references and differences (RAF-indexed):
    • Uniprot D4G3D4 (Start-124)
      • engineered mutation (102)
    Domains in SCOPe 2.08: d7cd2f_
  • Chain 'G':
    Compound: YabJ protein
    Species: Bacillus subtilis subsp. natto (strain BEST195) [TaxId:645657]
    Gene: yabJ, BSNT_00084
    Database cross-references and differences (RAF-indexed):
    • Uniprot D4G3D4 (Start-124)
      • engineered mutation (102)
    Domains in SCOPe 2.08: d7cd2g_
  • Chain 'H':
    Compound: YabJ protein
    Species: Bacillus subtilis subsp. natto (strain BEST195) [TaxId:645657]
    Gene: yabJ, BSNT_00084
    Database cross-references and differences (RAF-indexed):
    • Uniprot D4G3D4 (Start-124)
      • engineered mutation (102)
    Domains in SCOPe 2.08: d7cd2h_
  • Chain 'I':
    Compound: YabJ protein
    Species: Bacillus subtilis subsp. natto (strain BEST195) [TaxId:645657]
    Gene: yabJ, BSNT_00084
    Database cross-references and differences (RAF-indexed):
    • Uniprot D4G3D4 (Start-124)
      • engineered mutation (102)
    Domains in SCOPe 2.08: d7cd2i_
  • Chain 'J':
    Compound: YabJ protein
    Species: Bacillus subtilis subsp. natto (strain BEST195) [TaxId:645657]
    Gene: yabJ, BSNT_00084
    Database cross-references and differences (RAF-indexed):
    • Uniprot D4G3D4 (Start-124)
      • engineered mutation (102)
    Domains in SCOPe 2.08: d7cd2j_
  • Chain 'K':
    Compound: YabJ protein
    Species: Bacillus subtilis subsp. natto (strain BEST195) [TaxId:645657]
    Gene: yabJ, BSNT_00084
    Database cross-references and differences (RAF-indexed):
    • Uniprot D4G3D4 (Start-124)
      • engineered mutation (102)
    Domains in SCOPe 2.08: d7cd2k_
  • Chain 'L':
    Compound: YabJ protein
    Species: Bacillus subtilis subsp. natto (strain BEST195) [TaxId:645657]
    Gene: yabJ, BSNT_00084
    Database cross-references and differences (RAF-indexed):
    • Uniprot D4G3D4 (Start-124)
      • engineered mutation (102)
    Domains in SCOPe 2.08: d7cd2l_
  • Chain 'M':
    Compound: YabJ protein
    Species: Bacillus subtilis subsp. natto (strain BEST195) [TaxId:645657]
    Gene: yabJ, BSNT_00084
    Database cross-references and differences (RAF-indexed):
    • Uniprot D4G3D4 (Start-124)
      • engineered mutation (102)
    Domains in SCOPe 2.08: d7cd2m_
  • Chain 'N':
    Compound: YabJ protein
    Species: Bacillus subtilis subsp. natto (strain BEST195) [TaxId:645657]
    Gene: yabJ, BSNT_00084
    Database cross-references and differences (RAF-indexed):
    • Uniprot D4G3D4 (Start-124)
      • engineered mutation (102)
    Domains in SCOPe 2.08: d7cd2n_
  • Chain 'O':
    Compound: YabJ protein
    Species: Bacillus subtilis subsp. natto (strain BEST195) [TaxId:645657]
    Gene: yabJ, BSNT_00084
    Database cross-references and differences (RAF-indexed):
    • Uniprot D4G3D4 (Start-124)
      • engineered mutation (102)
    Domains in SCOPe 2.08: d7cd2o_
  • Chain 'P':
    Compound: YabJ protein
    Species: Bacillus subtilis subsp. natto (strain BEST195) [TaxId:645657]
    Gene: yabJ, BSNT_00084
    Database cross-references and differences (RAF-indexed):
    • Uniprot D4G3D4 (Start-124)
      • engineered mutation (102)
    Domains in SCOPe 2.08: d7cd2p_
  • Chain 'Q':
    Compound: YabJ protein
    Species: Bacillus subtilis subsp. natto (strain BEST195) [TaxId:645657]
    Gene: yabJ, BSNT_00084
    Database cross-references and differences (RAF-indexed):
    • Uniprot D4G3D4 (Start-124)
      • engineered mutation (102)
    Domains in SCOPe 2.08: d7cd2q_
  • Chain 'R':
    Compound: YabJ protein
    Species: Bacillus subtilis subsp. natto (strain BEST195) [TaxId:645657]
    Gene: yabJ, BSNT_00084
    Database cross-references and differences (RAF-indexed):
    • Uniprot D4G3D4 (Start-124)
      • engineered mutation (102)
    Domains in SCOPe 2.08: d7cd2r_
  • Chain 'S':
    Compound: YabJ protein
    Species: Bacillus subtilis subsp. natto (strain BEST195) [TaxId:645657]
    Gene: yabJ, BSNT_00084
    Database cross-references and differences (RAF-indexed):
    • Uniprot D4G3D4 (Start-124)
      • engineered mutation (102)
    Domains in SCOPe 2.08: d7cd2s_
  • Chain 'T':
    Compound: YabJ protein
    Species: Bacillus subtilis subsp. natto (strain BEST195) [TaxId:645657]
    Gene: yabJ, BSNT_00084
    Database cross-references and differences (RAF-indexed):
    • Uniprot D4G3D4 (Start-124)
      • engineered mutation (102)
    Domains in SCOPe 2.08: d7cd2t_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7cd2A (A:)
mtkavhtkhapaaigpysqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkav
leeagasfetvvkatvfiadmeqfaevnevygqyfdthkparfcvevarlpkdalveiev
ialvk

    Sequence, based on observed residues (ATOM records): (download) 
    >7cd2A (A:)
sqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkavleeagasfetvvkatvf
iadmeqfaevnevygqyfdthkparfcvevarlpkdalveievialvk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7cd2B (B:)
mtkavhtkhapaaigpysqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkav
leeagasfetvvkatvfiadmeqfaevnevygqyfdthkparfcvevarlpkdalveiev
ialvk

    Sequence, based on observed residues (ATOM records): (download) 
    >7cd2B (B:)
sqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkavleeagasfetvvkatvf
iadmeqfaevnevygqyfdthkparfcvevarlpkdalveievialvk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7cd2C (C:)
mtkavhtkhapaaigpysqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkav
leeagasfetvvkatvfiadmeqfaevnevygqyfdthkparfcvevarlpkdalveiev
ialvk

    Sequence, based on observed residues (ATOM records): (download) 
    >7cd2C (C:)
tkhapaaigpysqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkavleeaga
sfetvvkatvfiadmeqfaevnevygqyfdthkparfcvevarlpkdalveievialvk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7cd2D (D:)
mtkavhtkhapaaigpysqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkav
leeagasfetvvkatvfiadmeqfaevnevygqyfdthkparfcvevarlpkdalveiev
ialvk

    Sequence, based on observed residues (ATOM records): (download) 
    >7cd2D (D:)
sqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkavleeagasfetvvkatvf
iadmeqfaevnevygqyfdthkparfcvevarlpkdalveievialvk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >7cd2E (E:)
mtkavhtkhapaaigpysqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkav
leeagasfetvvkatvfiadmeqfaevnevygqyfdthkparfcvevarlpkdalveiev
ialvk

    Sequence, based on observed residues (ATOM records): (download) 
    >7cd2E (E:)
qgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkavleeagasfetvvkatvfi
admeqfaevnevygqyfdthkparfcvevarlpkdalveievialvk

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >7cd2F (F:)
mtkavhtkhapaaigpysqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkav
leeagasfetvvkatvfiadmeqfaevnevygqyfdthkparfcvevarlpkdalveiev
ialvk

    Sequence, based on observed residues (ATOM records): (download) 
    >7cd2F (F:)
qgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkavleeagasfetvvkatvfi
admeqfaevnevygqyfdthkparfcvevarlpkdalveievialvk

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >7cd2G (G:)
mtkavhtkhapaaigpysqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkav
leeagasfetvvkatvfiadmeqfaevnevygqyfdthkparfcvevarlpkdalveiev
ialvk

    Sequence, based on observed residues (ATOM records): (download) 
    >7cd2G (G:)
sqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkavleeagasfetvvkatvf
iadmeqfaevnevygqyfdthkparfcvevarlpkdalveievialvk

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >7cd2H (H:)
mtkavhtkhapaaigpysqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkav
leeagasfetvvkatvfiadmeqfaevnevygqyfdthkparfcvevarlpkdalveiev
ialvk

    Sequence, based on observed residues (ATOM records): (download) 
    >7cd2H (H:)
qgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkavleeagasfetvvkatvfi
admeqfaevnevygqyfdthkparfcvevarlpkdalveievialvk

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >7cd2I (I:)
mtkavhtkhapaaigpysqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkav
leeagasfetvvkatvfiadmeqfaevnevygqyfdthkparfcvevarlpkdalveiev
ialvk

    Sequence, based on observed residues (ATOM records): (download) 
    >7cd2I (I:)
qgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkavleeagasfetvvkatvfi
admeqfaevnevygqyfdthkparfcvevarlpkdalveievialvk

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >7cd2J (J:)
mtkavhtkhapaaigpysqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkav
leeagasfetvvkatvfiadmeqfaevnevygqyfdthkparfcvevarlpkdalveiev
ialvk

    Sequence, based on observed residues (ATOM records): (download) 
    >7cd2J (J:)
pysqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkavleeagasfetvvkat
vfiadmeqfaevnevygqyfdthkparfcvevarlpkdalveievialvk

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >7cd2K (K:)
mtkavhtkhapaaigpysqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkav
leeagasfetvvkatvfiadmeqfaevnevygqyfdthkparfcvevarlpkdalveiev
ialvk

    Sequence, based on observed residues (ATOM records): (download) 
    >7cd2K (K:)
qgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkavleeagasfetvvkatvfi
admeqfaevnevygqyfdthkparfcvevarlpkdalveievialvk

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >7cd2L (L:)
mtkavhtkhapaaigpysqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkav
leeagasfetvvkatvfiadmeqfaevnevygqyfdthkparfcvevarlpkdalveiev
ialvk

    Sequence, based on observed residues (ATOM records): (download) 
    >7cd2L (L:)
sqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkavleeagasfetvvkatvf
iadmeqfaevnevygqyfdthkparfcvevarlpkdalveievialvk

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >7cd2M (M:)
mtkavhtkhapaaigpysqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkav
leeagasfetvvkatvfiadmeqfaevnevygqyfdthkparfcvevarlpkdalveiev
ialvk

    Sequence, based on observed residues (ATOM records): (download) 
    >7cd2M (M:)
sqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkavleeagasfetvvkatvf
iadmeqfaevnevygqyfdthkparfcvevarlpkdalveievialvk

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >7cd2N (N:)
mtkavhtkhapaaigpysqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkav
leeagasfetvvkatvfiadmeqfaevnevygqyfdthkparfcvevarlpkdalveiev
ialvk

    Sequence, based on observed residues (ATOM records): (download) 
    >7cd2N (N:)
qgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkavleeagasfetvvkatvfi
admeqfaevnevygqyfdthkparfcvevarlpkdalveievialvk

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >7cd2O (O:)
mtkavhtkhapaaigpysqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkav
leeagasfetvvkatvfiadmeqfaevnevygqyfdthkparfcvevarlpkdalveiev
ialvk

    Sequence, based on observed residues (ATOM records): (download) 
    >7cd2O (O:)
qgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkavleeagasfetvvkatvfi
admeqfaevnevygqyfdthkparfcvevarlpkdalveievialvk

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >7cd2P (P:)
mtkavhtkhapaaigpysqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkav
leeagasfetvvkatvfiadmeqfaevnevygqyfdthkparfcvevarlpkdalveiev
ialvk

    Sequence, based on observed residues (ATOM records): (download) 
    >7cd2P (P:)
sqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkavleeagasfetvvkatvf
iadmeqfaevnevygqyfdthkparfcvevarlpkdalveievialvk

  • Chain 'Q':
    Sequence, based on SEQRES records: (download) 
    >7cd2Q (Q:)
mtkavhtkhapaaigpysqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkav
leeagasfetvvkatvfiadmeqfaevnevygqyfdthkparfcvevarlpkdalveiev
ialvk

    Sequence, based on observed residues (ATOM records): (download) 
    >7cd2Q (Q:)
qgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkavleeagasfetvvkatvfi
admeqfaevnevygqyfdthkparfcvevarlpkdalveievialvk

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >7cd2R (R:)
mtkavhtkhapaaigpysqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkav
leeagasfetvvkatvfiadmeqfaevnevygqyfdthkparfcvevarlpkdalveiev
ialvk

    Sequence, based on observed residues (ATOM records): (download) 
    >7cd2R (R:)
qgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkavleeagasfetvvkatvfi
admeqfaevnevygqyfdthkparfcvevarlpkdalveievialvk

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >7cd2S (S:)
mtkavhtkhapaaigpysqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkav
leeagasfetvvkatvfiadmeqfaevnevygqyfdthkparfcvevarlpkdalveiev
ialvk

    Sequence, based on observed residues (ATOM records): (download) 
    >7cd2S (S:)
sqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkavleeagasfetvvkatvf
iadmeqfaevnevygqyfdthkparfcvevarlpkdalveievialvk

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >7cd2T (T:)
mtkavhtkhapaaigpysqgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkav
leeagasfetvvkatvfiadmeqfaevnevygqyfdthkparfcvevarlpkdalveiev
ialvk

    Sequence, based on observed residues (ATOM records): (download) 
    >7cd2T (T:)
qgiivnnmfyssgqipltpsgemvngdikeqthqvfsnlkavleeagasfetvvkatvfi
admeqfaevnevygqyfdthkparfcvevarlpkdalveievialvk