PDB entry 7cb5

View 7cb5 on RCSB PDB site
Description: The 6-phosphogluconate dehydrogenase from Staphylococcus aureus (6-phosphogluconate bound)
Class: cytosolic protein
Keywords: Pentose phosphate pathway, decarboxylating, CYTOSOLIC PROTEIN
Deposited on 2020-06-10, released 2021-04-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-06-23, with a file datestamp of 2021-06-18.
Experiment type: XRAY
Resolution: 2.54 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 6-phosphogluconate dehydrogenase, decarboxylating
    Species: Staphylococcus aureus (strain Newman) [TaxId:426430]
    Gene: gnd, NWMN_1417
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7cb5a1, d7cb5a2
  • Chain 'B':
    Compound: 6-phosphogluconate dehydrogenase, decarboxylating
    Species: Staphylococcus aureus (strain Newman) [TaxId:426430]
    Gene: gnd, NWMN_1417
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7cb5b1, d7cb5b2
  • Chain 'C':
    Compound: 6-phosphogluconate dehydrogenase, decarboxylating
    Species: Staphylococcus aureus (strain Newman) [TaxId:426430]
    Gene: gnd, NWMN_1417
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7cb5c1, d7cb5c2
  • Chain 'D':
    Compound: 6-phosphogluconate dehydrogenase, decarboxylating
    Species: Staphylococcus aureus (strain Newman) [TaxId:426430]
    Gene: gnd, NWMN_1417
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7cb5d1, d7cb5d2
  • Heterogens: 6PG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7cb5A (A:)
mtqqigviglavmgknlawniesrgysvsvfnrssektdlmveeskgknihptysleefv
nslekprkillmvqagkatdatidsllpllddgdilidggntnyqdtirrnkalaqsain
figmgvsggeigaltgpslmpggqeeaynkvadildaiaakakdgascvtyigpngaghy
vkmvhngieyadmqliaesyammkellgmshediaqtfkdwnagelesylieitgdifmk
ldenkealvekildtagqkgtgkwtsinalelgipltiitesvfarfissikeervnask
elngpkasfdgdkkdflekirkalymskicsyaqgfaqmrkasednewnlklgdlamiwr
egciiraqflqkikdaydnnpglqnllldpyfknivteyqdalrdvvatgvqngvptpgf
sssinyydsyraadlpanliqaqrdyfgahtyerkdkegvfhtqwiee

    Sequence, based on observed residues (ATOM records): (download) 
    >7cb5A (A:)
mtqqigviglavmgknlawniesrgysvsvfnrssektdlmveeskgknihptysleefv
nslekprkillmvqagkatdatidsllpllddgdilidggntnyqdtirrnkalaqsain
figmgvsggeigaltgpslmpggqeeaynkvadildaiaakakdgascvtyigpngaghy
vkmvhngieyadmqliaesyammkellgmshediaqtfkdwnagelesylieitgdifmk
ldenkealvekildtagqkgtgkwtsinalelgipltiitesvfarfissikeervnask
elngpkasfdgdkkdflekirkalymskicsyaqgfaqmrkasednewnlklgdlamiwr
egciiraqflqkikdaydnnpglqnllldpyfknivteyqdalrdvvatgvqngvptpgf
sssinyydsyraadlpanliqaqrdyfgahtyerkdkegvfhtqwi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7cb5B (B:)
mtqqigviglavmgknlawniesrgysvsvfnrssektdlmveeskgknihptysleefv
nslekprkillmvqagkatdatidsllpllddgdilidggntnyqdtirrnkalaqsain
figmgvsggeigaltgpslmpggqeeaynkvadildaiaakakdgascvtyigpngaghy
vkmvhngieyadmqliaesyammkellgmshediaqtfkdwnagelesylieitgdifmk
ldenkealvekildtagqkgtgkwtsinalelgipltiitesvfarfissikeervnask
elngpkasfdgdkkdflekirkalymskicsyaqgfaqmrkasednewnlklgdlamiwr
egciiraqflqkikdaydnnpglqnllldpyfknivteyqdalrdvvatgvqngvptpgf
sssinyydsyraadlpanliqaqrdyfgahtyerkdkegvfhtqwiee

    Sequence, based on observed residues (ATOM records): (download) 
    >7cb5B (B:)
mtqqigviglavmgknlawniesrgysvsvfnrssektdlmveeskgknihptysleefv
nslekprkillmvqagkatdatidsllpllddgdilidggntnyqdtirrnkalaqsain
figmgvsggeigaltgpslmpggqeeaynkvadildaiaakakdgascvtyigpngaghy
vkmvhngieyadmqliaesyammkellgmshediaqtfkdwnagelesylieitgdifmk
ldenkealvekildtagqkgtgkwtsinalelgipltiitesvfarfissikeervnask
elngpkasfdgdkkdflekirkalymskicsyaqgfaqmrkasednewnlklgdlamiwr
egciiraqflqkikdaydnnpglqnllldpyfknivteyqdalrdvvatgvqngvptpgf
sssinyydsyraadlpanliqaqrdyfgahtyerkdkegvfhtqwie

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7cb5C (C:)
mtqqigviglavmgknlawniesrgysvsvfnrssektdlmveeskgknihptysleefv
nslekprkillmvqagkatdatidsllpllddgdilidggntnyqdtirrnkalaqsain
figmgvsggeigaltgpslmpggqeeaynkvadildaiaakakdgascvtyigpngaghy
vkmvhngieyadmqliaesyammkellgmshediaqtfkdwnagelesylieitgdifmk
ldenkealvekildtagqkgtgkwtsinalelgipltiitesvfarfissikeervnask
elngpkasfdgdkkdflekirkalymskicsyaqgfaqmrkasednewnlklgdlamiwr
egciiraqflqkikdaydnnpglqnllldpyfknivteyqdalrdvvatgvqngvptpgf
sssinyydsyraadlpanliqaqrdyfgahtyerkdkegvfhtqwiee

    Sequence, based on observed residues (ATOM records): (download) 
    >7cb5C (C:)
mtqqigviglavmgknlawniesrgysvsvfnrssektdlmveeskgknihptysleefv
nslekprkillmvqagkatdatidsllpllddgdilidggntnyqdtirrnkalaqsain
figmgvsggeigaltgpslmpggqeeaynkvadildaiaakakdgascvtyigpngaghy
vkmvhngieyadmqliaesyammkellgmshediaqtfkdwnagelesylieitgdifmk
ldenkealvekildtagqkgtgkwtsinalelgipltiitesvfarfissikeervnask
elngpkasfdgdkkdflekirkalymskicsyaqgfaqmrkasednewnlklgdlamiwr
egciiraqflqkikdaydnnpglqnllldpyfknivteyqdalrdvvatgvqngvptpgf
sssinyydsyraadlpanliqaqrdyfgahtyerkdkegvfhtqwi

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7cb5D (D:)
mtqqigviglavmgknlawniesrgysvsvfnrssektdlmveeskgknihptysleefv
nslekprkillmvqagkatdatidsllpllddgdilidggntnyqdtirrnkalaqsain
figmgvsggeigaltgpslmpggqeeaynkvadildaiaakakdgascvtyigpngaghy
vkmvhngieyadmqliaesyammkellgmshediaqtfkdwnagelesylieitgdifmk
ldenkealvekildtagqkgtgkwtsinalelgipltiitesvfarfissikeervnask
elngpkasfdgdkkdflekirkalymskicsyaqgfaqmrkasednewnlklgdlamiwr
egciiraqflqkikdaydnnpglqnllldpyfknivteyqdalrdvvatgvqngvptpgf
sssinyydsyraadlpanliqaqrdyfgahtyerkdkegvfhtqwiee

    Sequence, based on observed residues (ATOM records): (download) 
    >7cb5D (D:)
qigviglavmgknlawniesrgysvsvfnrssektdlmveeskgknihptysleefvnsl
ekprkillmvqagkatdatidsllpllddgdilidggntnyqdtirrnkalaqsainfig
mgvsggeigaltgpslmpggqeeaynkvadildaiaakakdgascvtyigpngaghyvkm
vhngieyadmqliaesyammkellgmshediaqtfkdwnagelesylieitgdifmklde
nkealvekildtagqkgtgkwtsinalelgipltiitesvfarfissikeervnaskeln
gpkasfdgdkkdflekirkalymskicsyaqgfaqmrkasednewnlklgdlamiwregc
iiraqflqkikdaydnnpglqnllldpyfknivteyqdalrdvvatgvqngvptpgfsss
inyydsyraadlpanliqaqrdyfgahtyerkdkegvfhtqwie