PDB entry 7c94

View 7c94 on RCSB PDB site
Description: crystal structure of the anti-human podoplanin antibody fab fragment complex with glycopeptide
Deposited on 2020-06-04, released 2020-09-30
The last revision was dated 2020-11-04, with a file datestamp of 2020-10-30.
Experiment type: XRAY
Resolution: 2.84 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: light chain of Fab fragment
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7C94 (0-219)
  • Chain 'B':
    Compound: heavy chain of Fab fragment
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7C94 (0-224)
  • Chain 'C':
    Compound: Peptide from Podoplanin
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: light chain of Fab fragment
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7C94 (0-End)
  • Chain 'E':
    Compound: heavy chain of Fab fragment
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7C94 (0-224)
  • Chain 'F':
    Compound: Peptide from Podoplanin
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: A2G, GAL, PO4, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >7c94A (A:)
divmtqspsslamsvgqkvtmnckssqsllnssnqknylawyqqkpgqspkllvyfastr
esgvpdrfigsgsgtdftltissaqaedladyfcqqyystpptfgagtklelkradaapt
vsifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstys
msstltltkdeyerhnsytceathktstspivksfnrnec

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7c94B (B:)
evqlvesggglvkpggslklscaasgftftryamswvrqtpekrlewvatisnggsytyy
ldsvkgrftlsrdnakntlylqmsslrsedtamyycarreggqagpawfvywgqgtlvtv
saakttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlq
sdlytlsssvtvpsstwpsetvtcnvahpasstkvdkkivprdcg

    Sequence, based on observed residues (ATOM records):
    >7c94B (B:)
evqlvesggglvkpggslklscaasgftftryamswvrqtpekrlewvatisnggsytyy
ldsvkgrftlsrdnakntlylqmsslrsedtamyycarreggqagpawfvywgqgtlvtv
saakttppsvyplapgaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsd
lytlsssvtvpsstwpsetvtcnvahpasstkvdkkivprdcg

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7c94C (C:)
lvatsvnsvtgiriedlp

    Sequence, based on observed residues (ATOM records):
    >7c94C (C:)
vtgiried

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7c94D (D:)
divmtqspsslamsvgqkvtmnckssqsllnssnqknylawyqqkpgqspkllvyfastr
esgvpdrfigsgsgtdftltissaqaedladyfcqqyystpptfgagtklelkradaapt
vsifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstys
msstltltkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records):
    >7c94D (D:)
divmtqspsslamsvgqkvtmnckssqsllnssnqknylawyqqkpgqspkllvyfastr
esgvpdrfigsgsgtdftltissaqaedladyfcqqyystpptfgagtklelkradaapt
vsifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstys
msstltltkdeyerhnsytceathktstspivksfnrne

  • Chain 'E':
    Sequence, based on SEQRES records:
    >7c94E (E:)
evqlvesggglvkpggslklscaasgftftryamswvrqtpekrlewvatisnggsytyy
ldsvkgrftlsrdnakntlylqmsslrsedtamyycarreggqagpawfvywgqgtlvtv
saakttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlq
sdlytlsssvtvpsstwpsetvtcnvahpasstkvdkkivprdcg

    Sequence, based on observed residues (ATOM records):
    >7c94E (E:)
evqlvesggglvkpggslklscaasgftftryamswvrqtpekrlewvatisnggsytyy
ldsvkgrftlsrdnakntlylqmsslrsedtamyycarreggqagpawfvywgqgtlvtv
saakttppsvyplapgsqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsd
lytlsssvtvpsstwpsetvtcnvahpasstkvdkkivprdcg

  • Chain 'F':
    Sequence, based on SEQRES records:
    >7c94F (F:)
lvatsvnsvtgiriedlp

    Sequence, based on observed residues (ATOM records):
    >7c94F (F:)
vtgiried