PDB entry 7c8v

View 7c8v on RCSB PDB site
Description: structure of sybody sr4 in complex with the sars-cov-2 s receptor binding domain (rbd)
Deposited on 2020-06-03, released 2020-06-24
The last revision was dated 2022-01-05, with a file datestamp of 2021-12-31.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Synthetic nanobody SR4
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 7C8V (0-143)
  • Chain 'B':
    Compound: Spike protein S1
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2 (3-204)
      • expression tag (0-2)
      • expression tag (205-212)
  • Heterogens: NAG, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7c8vA (A:)
gsssqvqlvesggglvqaggslrlscaasgfpvyswnmwwyrqapgkerewvaaieshgd
stryadsvkgrftisrdnakntvylqmnslkpedtavyycyvwvghtyygqgtqvtvsag
rageqkliseedlnsavdhhhhhh

    Sequence, based on observed residues (ATOM records):
    >7c8vA (A:)
qvqlvesggglvqaggslrlscaasgfpvyswnmwwyrqapgkerewvaaieshgdstry
adsvkgrftisrdnakntvylqmnslkpedtavyycyvwvghtyygqgtqvtvsagrag

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7c8vB (B:)
agspnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptk
lndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvg
gnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyq
pyrvvvlsfellhapatvcgpkkstgtlevlfq

    Sequence, based on observed residues (ATOM records):
    >7c8vB (B:)
nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcft
nvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyly
rlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvl
sfellhapatvcgp