PDB entry 7c79

View 7c79 on RCSB PDB site
Description: cryo-em structure of yeast ribonuclease mrp
Deposited on 2020-05-24, released 2020-07-08
The last revision was dated 2020-08-26, with a file datestamp of 2020-08-21.
Experiment type: EM
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ribonuclease MRP RNA subunit NME1
    Species: SACCHAROMYCES CEREVISIAE S288C [TaxId:559292]
  • Chain 'B':
    Compound: Ribonucleases P/MRP protein subunit POP1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Ribonucleases P/MRP protein subunit POP3
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: RNases MRP/P 32.9 kDa subunit
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Ribonuclease P/MRP protein subunit POP5
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Ribonucleases P/MRP protein subunit POP6
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Ribonucleases P/MRP protein subunit POP7
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Ribonucleases P/MRP protein subunit POP8
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Ribonuclease P/MRP protein subunit RPP1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Ribonuclease P/MRP protein subunit RPP1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: Ribonuclease MRP protein subunit SNM1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: Ribonuclease MRP protein subunit RMP1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG, ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7c79B (B:)
    msgslsrgnggkkvlnknqllkrnrirnarsiraeavaasstktgtpsdlsesgsklnvd
    qfissrqfevkqlqlamhnskaasstrifqalprklrrrtashnvrripkrmrnralrem
    rksdqqdvlkgssassrkahglnakqlykarmsikllrlaskstsmklsmppevtssnch
    vrqkiktlkrmikesstanpnikllnnrmgsydctgvnelapipkgrvkytkrqkhfawl
    pthiwnakrshmmkrwgyqmvwaptqkcfklthrlggdtcssdgalcmdssyigtiivkd
    ksndsegdflksiigkltaeranlrkyregqvlfqgliysfneengedstkplgpcdvfw
    vqkdtaiirlhpsiytqvfnillqhkekltvqdcryslasvtlkgakaleslasclrste
    ysksfeqfkmvsmitdhnalpqrctfafeaidprhlaapkklndsqrktvnsddilslhe
    nypqdeinavfnelcdpesrtqsynnqntlkeisarryklltatpnsinkttvpfkesdd
    psiplviirrlktrdwivvlpwfwllplwhllnriprmyhiglrqfqqiqyenkqlyfpd
    dypftqlgyiensfykkeasktkwdrkpmgkrinfekikdihntklpaysgeigdffssd
    wrflqilrngidylqrndktlelmdskktgqfnaqgvrdincvndvlefckdyeaktkam
    slsieenipvalcknrkcqfrtpdsisvnsssfsltffprciiavsctllerghpkdnar
    iyqvpekdlehwlqlakgvyrpngrkdhdlkiplpevhdligfitsgtyhlncgngmgig
    fidhhaairqptryvlirnvgtntyrlgewskisv
    

    Sequence, based on observed residues (ATOM records):
    >7c79B (B:)
    tpsdlsesgsklnvdqfissrqfevkqlqlamhnskaasstrifqalprklrrrtashnv
    rripkrmrnralremrkglnakqlykarmsikllrlaskstsmklsmppevtssnchvrq
    kiktlkrmikesstanpnikllnnrmgsydctgvnelapipkgrvkytkrqkhfawlpth
    iwnakrshmmkrwgyqmvwaptqkcfklthrlggdtcssdgalcmdssyigtiivkdksn
    dsegdflksiigkltaeranlrkyregqvlfqgliysfneengedstkplgpcdvfwvqk
    dtaiirlhpsiytqvfnillqhkekltvqdcryslasvtlkgakaleslasclrsteysk
    sfeqfkmvsmitdhnalpqrctfafeaidprhlaapkklndsqrktvnsddilslhenyp
    qdeinavfnelcdpesrtqsynnqntlkeisarryklltatpnsinkttvpfkesddpsi
    plviirrlktrdwivvlpwfwllplwhllnriprmyhiglrqfqqiqyenkqlyfpddyp
    ftqlgyiensfykkeasktkwdrkpmgkrinfekikdihntklpaysgeigdffssdwrf
    lqilrngidylqrndktlelmdgvrdincvndvlefckdyeaktkamslsieenipvalc
    knrkcqfrtsfsltffprciiavsctllerghpkdnariyqvpekdlehwlqlakgvyrp
    ngrkdhdlkiplpevhdligfitsgtyhlncgngmgigfidhhaairqptryvlirnvgt
    ntyrlgewskisv
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7c79C (C:)
    msgslksldkkiakrrqvykpvldnpftneahmwprvhdqpliwqllqssiinklihiqs
    kenypwelytdfneivqylsgahgnsdpvclfvcnkdpdvplvllqqipllcymapmtvk
    lvqlpksamdtfksvskygmlllrcddrvdkkfvsqiqknvdllqfpwlnaikyrptsvk
    llkttvpivskkrqk
    

    Sequence, based on observed residues (ATOM records):
    >7c79C (C:)
    pftneahmwprvhdqpliwqllqssiinklihiqskenypwelytdfneivqylsgahgn
    sdpvclfvcnkdpdvplvllqqipllcymapmtvklvqlpksamdtfksvskygmlllrc
    ddrvdkkfvsqiqknvdllqfpwlnaikyrpt
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7c79D (D:)
    mdrtqtfikdclftkcledpekpfnenrfqdtllllptdggltsrlqrqqrksklnldnl
    qkvsqlesadkqlekrdyqrinknskialreyinnckkntkkclklayenkitdkedllh
    yieekhptiyeslpqyvdfvpmykelwinyikellnitknlktfngslallklsmadyng
    allrvtksknktliglqgiviwdsqkffimivkgniideikcipkkgtvfqfeipisddd
    dsalrysilgdrfkyrsvdragrkfksrrcddmlyyiqn
    

    Sequence, based on observed residues (ATOM records):
    >7c79D (D:)
    drtqtfikdclftkcledpekpfnenrfqdtllllptdesadkqlekrdyqrinknskia
    lreyinnckkntkkclklayenkitdkedllhyieekhptiyeslpqyvdfvpmykelwi
    nyikellnitknlktfngslallklsmadyngallrvtksknktliglqgiviwdsqkff
    imivkgniideikcipkkgtvfqfeipisddddsalrysilgdrfkyrsvdragrkfksr
    rcddmlyyiqn
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >7c79E (E:)
    mvrlksryilfeiifpptdtnveesvskadillshhraspadvsiksilqeirrslslnl
    gdygsakcnsllqlkyfsnktstgiirchredcdlvimalmlmskigdvdglivnpvkvs
    gtikkieqfamrrnskilniikcsqsshlsdndfiindfkkigrenenenedd
    

    Sequence, based on observed residues (ATOM records):
    >7c79E (E:)
    vrlksryilfeiifpptdtnveesvskadillshhraspadvsiksilqeirrslslnlg
    dygsakcnsllqlkyfsnktstgiirchredcdlvimalmlmskigdvdglivnpvkvsg
    tikkieqfamrrnskilniikcsqs
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >7c79F (F:)
    mingvyyneisrdldissstqclrflketvipslanngnnstsiqyhgiskndnikksvn
    kldkqinmadrslglqqvvcifsygphiqkmlsileifkkgyiknnkkiyqwnkltsfdi
    kregrnelqeerlkvpilvtlvsdseiidlnlhsftkq
    

    Sequence, based on observed residues (ATOM records):
    >7c79F (F:)
    ingvyyneisrdldissstqclrflketvipslanngnnstsiqyhgiskndnikksvnk
    ldkqinmadrslglqqvvcifsygphiqkmlsileifkkgyiknnkkiyqwnkltsfdik
    regrnelqeerlkvpilvtlvsdseiidlnlhsftkq
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >7c79G (G:)
    malkknthnkstkrvtkhpslktlthkqihttifvksttpyvsalkrinkfldsvhkqgs
    syvavlgmgkavektlalgchfqdqknkkievytktievldevitegqadidmesdvedd
    dketqlkkravsgvelriyv
    

    Sequence, based on observed residues (ATOM records):
    >7c79G (G:)
    krvtkhpslktlthkqihttifvksttpyvsalkrinkfldsvhkqgssyvavlgmgkav
    ektlalgchfqdqknkkievytktievldevitegsdvedddketqlkkravsgvelriy
    v
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >7c79H (H:)
    mgkktfrewqyfklsitsfdqdvddahaidqmtwrqwlnnalkrsygifgegveysflhv
    ddklayirvnhadkdtfsssistyistdelvgspltvsilqessslrllevtdddrlwlk
    kvmeeeeqdckci
    

    Sequence, based on observed residues (ATOM records):
    >7c79H (H:)
    kktfrewqyfklsitsfdqdvddahaidqmtwrqwlnnalkrsygifgegveysflhvdd
    klayirvnhadkdtfsssistyistdelvgspltvsilqessslrllevtdddrlwlkkv
    meeeeqdckci
    

  • Chain 'I':
    Sequence, based on SEQRES records:
    >7c79I (I:)
    mlvdlnvpwpqnsyadkvtsqavnnliktlstlhmlgythiainftvnhsekfpndvkll
    npidikrrfgelmdrtglklysritliiddpskgqslskisqafdivaalpisekgltls
    ttnldidlltfqygsrlptflkhksicscvnrgvkleivygyalrdvqarrqfvsnvrsv
    irssrsrgivigsgamsplecrnilgvtsliknlglpsdrcskamgdlaslvllngrlrn
    kshkqtivtgggsgngddvvndvqgiddvqtikvvkrsmdaeqlghaskrhkp
    

    Sequence, based on observed residues (ATOM records):
    >7c79I (I:)
    mlvdlnvpwpqnsyadkvtsqavnnliktlstlhmlgythiainftvnhsekfpndvkll
    npidikrrfgelmdrtglklysritliiddpskgqslskisqafdivaalpisekgltls
    ttnldidlltfqygsrlptflkhksicscvnrgvkleivygyalrdvqarrqfvsnvrsv
    irssrsrgivigsgamsplecrnilgvtsliknlglpsdrcskamgdlaslvllngrlrn
    ks
    

  • Chain 'J':
    Sequence, based on SEQRES records:
    >7c79J (J:)
    mlvdlnvpwpqnsyadkvtsqavnnliktlstlhmlgythiainftvnhsekfpndvkll
    npidikrrfgelmdrtglklysritliiddpskgqslskisqafdivaalpisekgltls
    ttnldidlltfqygsrlptflkhksicscvnrgvkleivygyalrdvqarrqfvsnvrsv
    irssrsrgivigsgamsplecrnilgvtsliknlglpsdrcskamgdlaslvllngrlrn
    kshkqtivtgggsgngddvvndvqgiddvqtikvvkrsmdaeqlghaskrhkp
    

    Sequence, based on observed residues (ATOM records):
    >7c79J (J:)
    mlvdlnvpwpqnsyadkvtsqavnnliktlstlhmlgythiainftvnhsekfpndvkll
    npidikrrfgelmdrtglklysritliiddpskgqslskisqafdivaalpisekgltls
    ttnldidlltfqygsrlptflkhksicscvnrgvkleivygyalrdvqarrqfvsnvrsv
    irssrsrgivigsgamsplecrnilgvtsliknlglpsdrcskamgdlaslvllngrlrn
    kshkqtivtgggsgngddvvndvqgiddvqtikvvkrsmdaeqlghaskrhk
    

  • Chain 'K':
    Sequence, based on SEQRES records:
    >7c79K (K:)
    mnkdqaekyqerslrqkynllhvlptlnsralsglyyknfhnsvkryqimlpeqlksgkf
    cshcgcvyvpnfnaslqlttnteqgdsdelggesmegpkkciqvnclnceksklfewkse
    fvvptfgqdvspminstssgkvsyavkkpqksktstgkerskkrklnsltnllskrnqek
    kmekkkssslslesfmks
    

    Sequence, based on observed residues (ATOM records):
    >7c79K (K:)
    mnkdqaekyqerslrqkynllhvlptlnsralsglyyknfhnsvkryqimlpeqlksgkf
    cshcgcvyvpngdsdelggesmegpkkciqvnclnceksklfew
    

  • Chain 'L':
    Sequence, based on SEQRES records:
    >7c79L (L:)
    mdemdnvirsleqeyrlilllnhrnknqhraaswygsfnemkrncgqiitlfssrrlqak
    rlkdvewvklhrllqralfrqlkrwywqfngvialgqfvtlgctlvtllanvralymrlw
    einetefircgcliknlprtkaksvvndveelgeiidedignnvqenelvitsipkplte
    nckkkkkrkkknksaidgifg
    

    Sequence, based on observed residues (ATOM records):
    >7c79L (L:)
    emdnvirsleqeyrlilllnhrnknqhraaswygsfnemkrncgqiitlfssrrlqakrl
    kdvewvklhrllqralfrqlkrwywqfngvialgqfvtlgctlvtllanvralymrlwei
    netefircgcl