PDB entry 7c52

View 7c52 on RCSB PDB site
Description: Co-crystal structure of a photosynthetic LH1-RC in complex with electron donor HiPIP
Class: photosynthesis
Keywords: LH1-RC, HiPIP, purple bacteria, electron transfer, PHOTOSYNTHESIS
Deposited on 2020-05-18, released 2021-03-03
The last revision prior to the SCOPe 2.07 freeze date was dated 2021-03-03, with a file datestamp of 2021-02-26.
Experiment type: XRAY
Resolution: 2.89 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '0':
    Compound: LH1 beta polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c520_
  • Chain '1':
    Compound: LH1 alpha polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c521_
  • Chain '2':
    Compound: LH1 beta polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c522_
  • Chain '3':
    Compound: LH1 alpha polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c523_
  • Chain '4':
    Compound: LH1 beta polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c524_
  • Chain '5':
    Compound: LH1 alpha polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c525_
  • Chain '6':
    Compound: LH1 beta polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c526_
  • Chain '7':
    Compound: LH1 alpha polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c527_
  • Chain '8':
    Compound: LH1 beta polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c528_
  • Chain '9':
    Compound: LH1 alpha polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c529_
  • Chain 'A':
    Compound: LH1 alpha polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52a_
  • Chain 'B':
    Compound: LH1 beta polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Photosynthetic reaction center cytochrome c subunit
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52c_
  • Chain 'D':
    Compound: LH1 alpha polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52d_
  • Chain 'E':
    Compound: LH1 beta polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52e_
  • Chain 'F':
    Compound: LH1 alpha polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52f_
  • Chain 'G':
    Compound: LH1 beta polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52g_
  • Chain 'H':
    Compound: Photosynthetic reaction center H subunit
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52h1, d7c52h2
  • Chain 'I':
    Compound: LH1 alpha polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52i_
  • Chain 'J':
    Compound: LH1 beta polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52j_
  • Chain 'K':
    Compound: LH1 alpha polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52k_
  • Chain 'L':
    Compound: Photosynthetic reaction center L subunit
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: Photosynthetic reaction center M subunit
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52m_
  • Chain 'N':
    Compound: LH1 beta polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52n_
  • Chain 'O':
    Compound: LH1 alpha polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52o_
  • Chain 'P':
    Compound: LH1 beta polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52p_
  • Chain 'Q':
    Compound: LH1 alpha polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52q_
  • Chain 'R':
    Compound: LH1 beta polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52r_
  • Chain 'S':
    Compound: LH1 alpha polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52s_
  • Chain 'T':
    Compound: LH1 beta polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52t_
  • Chain 'U':
    Compound: LH1 alpha polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52u_
  • Chain 'V':
    Compound: LH1 beta polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52v_
  • Chain 'W':
    Compound: LH1 alpha polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52w_
  • Chain 'X':
    Compound: LH1 beta polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52x_
  • Chain 'Y':
    Compound: LH1 alpha polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52y_
  • Chain 'Z':
    Compound: LH1 beta polypeptide
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52z_
  • Chain 'b':
    Compound: high-potential iron-sulfur protein
    Species: Thermochromatium tepidum [TaxId:1050]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c52b_
  • Heterogens: HEM, SF4, CA, GOL, LHG, PGV, BCL, BPH, UQ8, SO4, FE, MQ8, CRT, CDL, PEF, LMT

PDB Chain Sequences:

  • Chain '0':
    Sequence, based on SEQRES records: (download) 
    >7c520 (0:)
maeqksltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c520 (0:)
ksltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

  • Chain '1':
    Sequence, based on SEQRES records: (download) 
    >7c521 (1:)
mftmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalgk
k

    Sequence, based on observed residues (ATOM records): (download) 
    >7c521 (1:)
mnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalg

  • Chain '2':
    Sequence, based on SEQRES records: (download) 
    >7c522 (2:)
maeqksltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c522 (2:)
ltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

  • Chain '3':
    Sequence, based on SEQRES records: (download) 
    >7c523 (3:)
mftmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalgk
k

    Sequence, based on observed residues (ATOM records): (download) 
    >7c523 (3:)
mnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalg

  • Chain '4':
    Sequence, based on SEQRES records: (download) 
    >7c524 (4:)
maeqksltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c524 (4:)
sltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

  • Chain '5':
    Sequence, based on SEQRES records: (download) 
    >7c525 (5:)
mftmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalgk
k

    Sequence, based on observed residues (ATOM records): (download) 
    >7c525 (5:)
anlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalg

  • Chain '6':
    Sequence, based on SEQRES records: (download) 
    >7c526 (6:)
maeqksltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c526 (6:)
sltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

  • Chain '7':
    Sequence, based on SEQRES records: (download) 
    >7c527 (7:)
mftmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalgk
k

    Sequence, based on observed residues (ATOM records): (download) 
    >7c527 (7:)
tmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalg

  • Chain '8':
    Sequence, based on SEQRES records: (download) 
    >7c528 (8:)
maeqksltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c528 (8:)
ltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

  • Chain '9':
    Sequence, based on SEQRES records: (download) 
    >7c529 (9:)
mftmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalgk
k

    Sequence, based on observed residues (ATOM records): (download) 
    >7c529 (9:)
tmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalg

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7c52A (A:)
mftmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalgk
k

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52A (A:)
anlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalg

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7c52C (C:)
cegpppgteqigyrgvgmenyynkrqralsiqanqpveslpaadstgpkasevyqnvqvl
kdlsvgeftrtmvavttwvspkegcnychvpgnwasddiytkvvsrrmfelvraansdwk
ahvaetgvtcytchrgnpvpkyawvtdpgpkypsglkptgqnygsktvayaslpfdpltp
fldqaneiritgnaalagsnpaslkqaewtfglmmnisdslgvgctfchntrafndwtqs
tpkrttawyairhvrdinqnyiwplndvlpasrkgpygdplrvscmtchqavnkplygaq
makdypglykt

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7c52D (D:)
mftmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalgk
k

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52D (D:)
nanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalg

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >7c52E (E:)
maeqksltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52E (E:)
ltddeakefhaifmqsmyawfglvviahllawlyrpwl

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >7c52F (F:)
mftmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalgk
k

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52F (F:)
nanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalg

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >7c52G (G:)
maeqksltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52G (G:)
sltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >7c52H (H:)
msagithyidaaqitiwafwlfffgliiylrredkregypldsdrtersggrvkvvgfpd
lpdpktfvlphnggtvvaprveapvavnatpfspapgsplvpngdpmlsgfgpaaspdrp
khcdltfeglpkivpmrvakefsiaegdpdprgmtvvgldgevagtvsdvwvdrsepqir
ylevevaankkkvllpigfsrfdkkarkvkvdaikaahfanvptlsnpdqvtlyeedkvc
ayyaggklyataeragpll

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52H (H:)
ithyidaaqitiwafwlfffgliiylrredkregypldsdrtersggrvkvvgfpdlpdp
ktfvlphnggtvvaprveapvavnatpfspapgsplvpngdpmlsgfgpaaspdrpkhcd
ltfeglpkivpmrvakefsiaegdpdprgmtvvgldgevagtvsdvwvdrsepqirylev
evaankkkvllpigfsrfdkkarkvkvdaikaahfanvptlsnpdqvtlyeedkvcayya
ggklyataeragpll

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >7c52I (I:)
mftmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalgk
k

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52I (I:)
tmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalg

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >7c52J (J:)
maeqksltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52J (J:)
sltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >7c52K (K:)
mftmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalgk
k

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52K (K:)
tmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalg

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >7c52M (M:)
mpeyqniftavqvrapaypgvplpkgnlprigrpifsywlgkigdaqigpiylgltgtls
iffglvaisiigfnmlasvhwdvfqflkhffwlgleppppqyglripplseggwwlmagl
fltlsillwwvrtykraealgmsqhlswafaaaiffylvlgfirpvmmgswakavpfgif
phldwtaafsirygnlyynpfhmlsiaflygsallfamhgatilsvsrfggdreidqith
rgtaaeraalfwrwtmgfnvtmesihrwawwcavltvitagigillsgtvvdnwylwavk
hgmapaypevvtavnpyetaaevmq

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52M (M:)
peyqniftavqvrapaypgvplpkgnlprigrpifsywlgkigdaqigpiylgltgtlsi
ffglvaisiigfnmlasvhwdvfqflkhffwlgleppppqyglripplseggwwlmaglf
ltlsillwwvrtykraealgmsqhlswafaaaiffylvlgfirpvmmgswakavpfgifp
hldwtaafsirygnlyynpfhmlsiaflygsallfamhgatilsvsrfggdreidqithr
gtaaeraalfwrwtmgfnvtmesihrwawwcavltvitagigillsgtvvdnwylwavkh
gmapaypevvtavnpyet

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >7c52N (N:)
maeqksltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52N (N:)
sltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >7c52O (O:)
mftmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalgk
k

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52O (O:)
mnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalg

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >7c52P (P:)
maeqksltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52P (P:)
sltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

  • Chain 'Q':
    Sequence, based on SEQRES records: (download) 
    >7c52Q (Q:)
mftmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalgk
k

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52Q (Q:)
tmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalg

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >7c52R (R:)
maeqksltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52R (R:)
ltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >7c52S (S:)
mftmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalgk
k

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52S (S:)
tmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqal

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >7c52T (T:)
maeqksltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52T (T:)
ksltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

  • Chain 'U':
    Sequence, based on SEQRES records: (download) 
    >7c52U (U:)
mftmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalgk
k

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52U (U:)
tmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalgk

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >7c52V (V:)
maeqksltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52V (V:)
sltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

  • Chain 'W':
    Sequence, based on SEQRES records: (download) 
    >7c52W (W:)
mftmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalgk
k

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52W (W:)
nanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalgk

  • Chain 'X':
    Sequence, based on SEQRES records: (download) 
    >7c52X (X:)
maeqksltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52X (X:)
ltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

  • Chain 'Y':
    Sequence, based on SEQRES records: (download) 
    >7c52Y (Y:)
mftmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalgk
k

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52Y (Y:)
tmnanlykiwlildprrvlvsivafqivlgllihmivlstdlnwlddnipvsyqalg

  • Chain 'Z':
    Sequence, based on SEQRES records: (download) 
    >7c52Z (Z:)
maeqksltgltddeakefhaifmqsmyawfglvviahllawlyrpwl

    Sequence, based on observed residues (ATOM records): (download) 
    >7c52Z (Z:)
tgltddeakefhaifmqsmyawfglvviahllawlyrpwl

  • Chain 'b':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7c52b (b:)
aapanavtaddptaialkynqdatkservaaarpglppeeqhcancqfmqanvgegdwkg
cqlfpgklinvngwcaswtlkag