PDB entry 7c0l

View 7c0l on RCSB PDB site
Description: Crystal structure of a dinucleotide-binding protein of ABC transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (Form III)
Class: transport protein
Keywords: c-di-GMP/AMP, Substrate-binding protein, Thermus thermophilus, tRNA synthesis and/or modification, Venus Fly-trap mechanism, UgpB, TRANSPORT PROTEIN
Deposited on 2020-05-01, released 2021-03-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-03-10, with a file datestamp of 2021-03-05.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Sugar ABC transporter, periplasmic sugar-binding protein
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Gene: TTHA0379
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7c0la_
  • Chain 'B':
    Compound: Sugar ABC transporter, periplasmic sugar-binding protein
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Gene: TTHA0379
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7c0lb_
  • Heterogens: FGO, CL, SO3, EDO, GOL, CO2, SO2, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7c0lA (A:)
mmkpedvikeqcarakvvaelwhgftggapkaalenlvvefnkaqqgrcvrpvpqggyrd
lstkikaafaagkvptmaqafennialyleakallpieslgvklqgvnltflnavrfggv
vygvpfnksiqvlyynkdllkkhgvpvpatleefvaaakklsraeggpvywfqpdastfa
yfffnlggsylkdgklvlnskeavealtllqngvkegwakpitsgyinqnlgsgpyafsv
dtsagytyylraakfdlgvatlpgrtkgqpgyglvqgtnlvvfrqaskeeqavakdflef
vlspraqavfatatgyvpvtegalkdpvyqayaaenpdyativrqsryakfepalaeweq
irfdilgqaikeailnkadpkaaldraqklaedllssrtrhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0lA (A:)
kpedvikeqcarakvvaelwhgftggapkaalenlvvefnkaqqgrcvrpvpqggyrdls
tkikaafaagkvptmaqafennialyleakallpieslgvklqgvnltflnavrfggvvy
gvpfnksiqvlyynkdllkkhgvpvpatleefvaaakklsraeggpvywfqpdastfayf
ffnlggsylkdgklvlnskeavealtllqngvkegwakpitsgyinqnlgsgpyafsvdt
sagytyylraakfdlgvatlpgrtkgqpgyglvqgtnlvvfrqaskeeqavakdflefvl
spraqavfatatgyvpvtegalkdpvyqayaaenpdyativrqsryakfepalaeweqir
fdilgqaikeailnkadpkaaldraqklaedll

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7c0lB (B:)
mmkpedvikeqcarakvvaelwhgftggapkaalenlvvefnkaqqgrcvrpvpqggyrd
lstkikaafaagkvptmaqafennialyleakallpieslgvklqgvnltflnavrfggv
vygvpfnksiqvlyynkdllkkhgvpvpatleefvaaakklsraeggpvywfqpdastfa
yfffnlggsylkdgklvlnskeavealtllqngvkegwakpitsgyinqnlgsgpyafsv
dtsagytyylraakfdlgvatlpgrtkgqpgyglvqgtnlvvfrqaskeeqavakdflef
vlspraqavfatatgyvpvtegalkdpvyqayaaenpdyativrqsryakfepalaeweq
irfdilgqaikeailnkadpkaaldraqklaedllssrtrhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0lB (B:)
kpedvikeqcarakvvaelwhgftggapkaalenlvvefnkaqqgrcvrpvpqggyrdls
tkikaafaagkvptmaqafennialyleakallpieslgvklqgvnltflnavrfggvvy
gvpfnksiqvlyynkdllkkhgvpvpatleefvaaakklsraeggpvywfqpdastfayf
ffnlggsylkdgklvlnskeavealtllqngvkegwakpitsgyinqnlgsgpyafsvdt
sagytyylraakfdlgvatlpgrtkgqpgyglvqgtnlvvfrqaskeeqavakdflefvl
spraqavfatatgyvpvtegalkdpvyqayaaenpdyativrqsryakfepalaeweqir
fdilgqaikeailnkadpkaaldraqklaedllss