PDB entry 7c0e

View 7c0e on RCSB PDB site
Description: Crystal structure of Azospirillum brasilense L-2-keto-3-deoxyarabonate dehydratase (2-oxobutyrate-bound form)
Class: lyase
Keywords: L-2-keto-3-deoxyarabonate dehydratase, LYASE
Deposited on 2020-05-01, released 2020-08-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-09-02, with a file datestamp of 2020-08-28.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7c0ea_
  • Chain 'B':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7c0eb_
  • Chain 'C':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7c0ec_
  • Chain 'D':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7c0ed_
  • Chain 'E':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7c0ee_
  • Chain 'F':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7c0ef_
  • Chain 'G':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7c0eg_
  • Chain 'H':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7c0eh_
  • Chain 'I':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7c0ei_
  • Chain 'J':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7c0ej_
  • Chain 'K':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7c0ek_
  • Chain 'L':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7c0el_
  • Heterogens: FF9, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7c0eA (A:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fxietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0eA (A:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfxietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rwah

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7c0eB (B:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fxietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0eB (B:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfxietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rw

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7c0eC (C:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fxietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0eC (C:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfxietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rwah

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7c0eD (D:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fxietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0eD (D:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfxietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rwa

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >7c0eE (E:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fxietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0eE (E:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfxietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rwah

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >7c0eF (F:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fxietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0eF (F:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfxietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rw

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >7c0eG (G:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fxietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0eG (G:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfxietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rwa

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >7c0eH (H:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fxietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0eH (H:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfxietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rwa

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >7c0eI (I:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fxietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0eI (I:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfxietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rwah

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >7c0eJ (J:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fxietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0eJ (J:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfxietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rwah

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >7c0eK (K:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fxietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0eK (K:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfxietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rwa

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >7c0eL (L:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fxietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0eL (L:)
rhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdvlt
rtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqife
fyarvsdaiaipimvqdapasgtalsapflarmareieqvayfxietpgaanklrelirl
ggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryqaw
lplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvlrw
a