PDB entry 7by8

View 7by8 on RCSB PDB site
Description: Malate Dehydrogenase from Geobacillus stearothermophilus (gs-MDH)
Class: oxidoreductase
Keywords: Malate Dehydrogenase, OXIDOREDUCTASE
Deposited on 2020-04-22, released 2021-03-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-03-24, with a file datestamp of 2021-03-19.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: malate dehydrogenase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: MDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7by8a1, d7by8a2
  • Chain 'B':
    Compound: malate dehydrogenase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: MDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7by8b1, d7by8b2
  • Chain 'C':
    Compound: malate dehydrogenase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: MDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7by8c1, d7by8c2
  • Chain 'D':
    Compound: malate dehydrogenase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: MDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7by8d1, d7by8d2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7by8A (A:)
mgsshhhhhhssglvprgshmamkrkkisvigagftgattafllaqkelgdvvlvdipql
enptkgkaldmleaspvlgfdaniigtsdyadtadsdivvitagiarkpgmsrddlvttn
qkimkqvtkevvkyspncyiivltnpvdamtytvfkesgfpknrvigqsgvldtarfrtf
vaeelnisvkdvtgfvlgghgddmvplvrysyaggipleklipkdrldaivertrkggge
ivnllgngsayyapaaslvemveailkdqrrilpaiaylegeygyegiylgvptilggng
iekvielelteeekaalaksvesvknvmrmle

    Sequence, based on observed residues (ATOM records): (download) 
    >7by8A (A:)
amkrkkisvigagftgattafllaqkelgdvvlvdipqlenptkgkaldmleaspvlgfd
aniigtsdyadtadsdivvitagiarkpgmsrddlvttnqkimkqvtkevvkyspncyii
vltnpvdamtytvfkesgfpknrvigqsgvldtarfrtfvaeelnisvkdvtgfvlgghg
ddmvplvrysyaggipleklipkdrldaivertrkgggeivnllgngsayyapaaslvem
veailkdqrrilpaiaylegeygyegiylgvptilggngiekvielelteeekaalaksv
esvknvmrmle

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7by8B (B:)
mgsshhhhhhssglvprgshmamkrkkisvigagftgattafllaqkelgdvvlvdipql
enptkgkaldmleaspvlgfdaniigtsdyadtadsdivvitagiarkpgmsrddlvttn
qkimkqvtkevvkyspncyiivltnpvdamtytvfkesgfpknrvigqsgvldtarfrtf
vaeelnisvkdvtgfvlgghgddmvplvrysyaggipleklipkdrldaivertrkggge
ivnllgngsayyapaaslvemveailkdqrrilpaiaylegeygyegiylgvptilggng
iekvielelteeekaalaksvesvknvmrmle

    Sequence, based on observed residues (ATOM records): (download) 
    >7by8B (B:)
amkrkkisvigagftgattafllaqkelgdvvlvdipqlenptkgkaldmleaspvlgfd
aniigtsdyadtadsdivvitagiarkpgmsrddlvttnqkimkqvtkevvkyspncyii
vltnpvdamtytvfkesgfpknrvigqsgvldtarfrtfvaeelnisvkdvtgfvlgghg
ddmvplvrysyaggipleklipkdrldaivertrkgggeivnllgngsayyapaaslvem
veailkdqrrilpaiaylegeygyegiylgvptilggngiekvielelteeekaalaksv
esvknvmrmle

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7by8C (C:)
mgsshhhhhhssglvprgshmamkrkkisvigagftgattafllaqkelgdvvlvdipql
enptkgkaldmleaspvlgfdaniigtsdyadtadsdivvitagiarkpgmsrddlvttn
qkimkqvtkevvkyspncyiivltnpvdamtytvfkesgfpknrvigqsgvldtarfrtf
vaeelnisvkdvtgfvlgghgddmvplvrysyaggipleklipkdrldaivertrkggge
ivnllgngsayyapaaslvemveailkdqrrilpaiaylegeygyegiylgvptilggng
iekvielelteeekaalaksvesvknvmrmle

    Sequence, based on observed residues (ATOM records): (download) 
    >7by8C (C:)
amkrkkisvigagftgattafllaqkelgdvvlvdipqlenptkgkaldmleaspvlgfd
aniigtsdyadtadsdivvitagidlvttnqkimkqvtkevvkyspncyiivltnpvdam
tytvfkesgfpknrvigqsgvldtarfrtfvaeelnisvkdvtgfvlgghgddmvplvry
syaggipleklipkdrldaivertrkgggeivnllgngsayyapaaslvemveailkdqr
rilpaiaylegeygyegiylgvptilggngiekvielelteeekaalaksvesvknvmrm
le

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7by8D (D:)
mgsshhhhhhssglvprgshmamkrkkisvigagftgattafllaqkelgdvvlvdipql
enptkgkaldmleaspvlgfdaniigtsdyadtadsdivvitagiarkpgmsrddlvttn
qkimkqvtkevvkyspncyiivltnpvdamtytvfkesgfpknrvigqsgvldtarfrtf
vaeelnisvkdvtgfvlgghgddmvplvrysyaggipleklipkdrldaivertrkggge
ivnllgngsayyapaaslvemveailkdqrrilpaiaylegeygyegiylgvptilggng
iekvielelteeekaalaksvesvknvmrmle

    Sequence, based on observed residues (ATOM records): (download) 
    >7by8D (D:)
amkrkkisvigagftgattafllaqkelgdvvlvdipqlenptkgkaldmleaspvlgfd
aniigtsdyadtadsdivvitagilvttnqkimkqvtkevvkyspncyiivltnpvdamt
ytvfkesgfpknrvigqsgvldtarfrtfvaeelnisvkdvtgfvlgghgddmvplvrys
yaggipleklipkdrldaivertrkgggeivnllgngsayyapaaslvemveailkdqrr
ilpaiaylegeygyegiylgvptilggngiekvielelteeekaalaksvesvknvmrml
e