PDB entry 7bub

View 7bub on RCSB PDB site
Description: cryo-em structure of dengue virus serotype 2 complexed with fab sign- 3c at ph 6.5
Deposited on 2020-04-06, released 2020-05-13
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: EM
Resolution: 4.2 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dengue virus serotype2 E protein
    Species: DENGUE VIRUS 2 [TaxId:11060]
    Database cross-references and differences (RAF-indexed):
    • PDB 7BUB (0-494)
  • Chain 'B':
    Compound: Dengue virus serotype2 E protein
    Species: DENGUE VIRUS 2 [TaxId:11060]
    Database cross-references and differences (RAF-indexed):
    • PDB 7BUB (0-494)
  • Chain 'C':
    Compound: Dengue virus serotype2 E protein
    Species: DENGUE VIRUS 2 [TaxId:11060]
    Database cross-references and differences (RAF-indexed):
    • PDB 7BUB (0-494)
  • Chain 'D':
    Compound: Dengue virus serotype 2 M protein
    Species: DENGUE VIRUS 2 [TaxId:11060]
    Database cross-references and differences (RAF-indexed):
    • PDB 7BUB (0-71)
  • Chain 'E':
    Compound: Dengue virus serotype 2 M protein
    Species: DENGUE VIRUS 2 [TaxId:11060]
    Database cross-references and differences (RAF-indexed):
    • PDB 7BUB (0-71)
  • Chain 'F':
    Compound: Dengue virus serotype 2 M protein
    Species: DENGUE VIRUS 2 [TaxId:11060]
    Database cross-references and differences (RAF-indexed):
    • PDB 7BUB (0-71)
  • Chain 'G':
    Compound: SIgN-3C Fab heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7BUB (0-131)
  • Chain 'H':
    Compound: SIgN-3C Fab heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7BUB (0-131)
  • Chain 'I':
    Compound: SIgN-3C Fab light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7BUB (0-106)
  • Chain 'L':
    Compound: SIgN-3C Fab light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7BUB (0-106)
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >7bubA (A:)
mrcigisnrdfvegvsggswvdivlehgscvttmaknkptldfelikteakhpatlrkyc
veakltntttasrcptqgepslneeqdkrfvckhsmvdrgwgngcglfgkggivtcamft
ckknmegkvvqpenleytivitphsgeenavgndtgkhgkeikvtpqssiteaeltgygt
vtmecsprtgldfnemvllqmenkawlvhrqwfldlplpwlpgadtqgsnwiqketlvtf
knphakkqdvvvlgsqegamhtaltgateiqmssgnllftghlkcrlrmdklqlkgmsys
mctgkfkvvkeiaetqhgtivirvqyegdgspckipfeimdlekrhvlgrlitvnpivte
kdspvnieaeppfgdsyiiigvepgqlklswfkkgssigqmfettmrgakrmailgdtaw
dfgslggvftsigkalhqvfgaiygaafsgvswtmkiligvvitwigmnsrstslsvslv
lvgvvtlylgvmvqa

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >7bubB (B:)
mrcigisnrdfvegvsggswvdivlehgscvttmaknkptldfelikteakhpatlrkyc
veakltntttasrcptqgepslneeqdkrfvckhsmvdrgwgngcglfgkggivtcamft
ckknmegkvvqpenleytivitphsgeenavgndtgkhgkeikvtpqssiteaeltgygt
vtmecsprtgldfnemvllqmenkawlvhrqwfldlplpwlpgadtqgsnwiqketlvtf
knphakkqdvvvlgsqegamhtaltgateiqmssgnllftghlkcrlrmdklqlkgmsys
mctgkfkvvkeiaetqhgtivirvqyegdgspckipfeimdlekrhvlgrlitvnpivte
kdspvnieaeppfgdsyiiigvepgqlklswfkkgssigqmfettmrgakrmailgdtaw
dfgslggvftsigkalhqvfgaiygaafsgvswtmkiligvvitwigmnsrstslsvslv
lvgvvtlylgvmvqa

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >7bubC (C:)
mrcigisnrdfvegvsggswvdivlehgscvttmaknkptldfelikteakhpatlrkyc
veakltntttasrcptqgepslneeqdkrfvckhsmvdrgwgngcglfgkggivtcamft
ckknmegkvvqpenleytivitphsgeenavgndtgkhgkeikvtpqssiteaeltgygt
vtmecsprtgldfnemvllqmenkawlvhrqwfldlplpwlpgadtqgsnwiqketlvtf
knphakkqdvvvlgsqegamhtaltgateiqmssgnllftghlkcrlrmdklqlkgmsys
mctgkfkvvkeiaetqhgtivirvqyegdgspckipfeimdlekrhvlgrlitvnpivte
kdspvnieaeppfgdsyiiigvepgqlklswfkkgssigqmfettmrgakrmailgdtaw
dfgslggvftsigkalhqvfgaiygaafsgvswtmkiligvvitwigmnsrstslsvslv
lvgvvtlylgvmvqa

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >7bubD (D:)
svalvphvgmgletrtetwmssegawkhaqrietwilrhpgftimaailaytigttyfqr
vlifilltavtp

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >7bubE (E:)
svalvphvgmgletrtetwmssegawkhaqrietwilrhpgftimaailaytigttyfqr
vlifilltavtp

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >7bubF (F:)
svalvphvgmgletrtetwmssegawkhaqrietwilrhpgftimaailaytigttyfqr
vlifilltavtp

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >7bubG (G:)
evqlvqsgpdvekpgasvkvsckasgytftsnyihwvrqapgqglewmgvinprggstas
aqkfqgritmtrdtststvymelsslrsddtavyycarggralfydsyttprdggswwfd
pwgqgslvtvss

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >7bubH (H:)
evqlvqsgpdvekpgasvkvsckasgytftsnyihwvrqapgqglewmgvinprggstas
aqkfqgritmtrdtststvymelsslrsddtavyycarggralfydsyttprdggswwfd
pwgqgslvtvss

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >7bubI (I:)
diqltqspsslsasvgdrvtftcqasqdirkylnwyqqkpgkapklliydasnlktgvps
rfsgsgsgtdftftisslqpedvatyycqqfddlpitfgqgtrlqik

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >7bubL (L:)
diqltqspsslsasvgdrvtftcqasqdirkylnwyqqkpgkapklliydasnlktgvps
rfsgsgsgtdftftisslqpedvatyycqqfddlpitfgqgtrlqik