PDB entry 7bpk

View 7bpk on RCSB PDB site
Description: Zika virus envelope protein mutant bound to mAb
Class: viral protein/immune system
Keywords: Zika virus, envelop protein, monoclonal antibody, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM complex
Deposited on 2020-03-23, released 2021-03-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-03-24, with a file datestamp of 2021-03-19.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: envelope protein
    Species: Zika virus [TaxId:64320]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A142I5B9 (1-End)
      • expression tag (0)
      • conflict (98)
      • conflict (103)
      • conflict (106-108)
    Domains in SCOPe 2.08: d7bpka1, d7bpka2, d7bpka3
  • Chain 'B':
    Compound: envelope protein
    Species: Zika virus [TaxId:64320]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A142I5B9 (1-End)
      • expression tag (0)
      • conflict (98)
      • conflict (103)
      • conflict (106-108)
    Domains in SCOPe 2.08: d7bpkb1, d7bpkb2, d7bpkb3
  • Chain 'C':
    Compound: Z3L1 Heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7BPK (0-126)
    Domains in SCOPe 2.08: d7bpkc_
  • Chain 'D':
    Compound: IG c307_light_IGLV1-51_IGLJ2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7bpkd_
  • Chain 'H':
    Compound: Z3L1 Heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7BPK (0-126)
    Domains in SCOPe 2.08: d7bpkh_
  • Chain 'L':
    Compound: IG c307_light_IGLV1-51_IGLJ2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7bpkl_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7bpkA (A:)
mircigvsnrdfvegmsggtwvdvvlehggcvtvmaqdkptvdielvtttvsnmaevrsy
cyeasisdmasdsrcptqgeayldkqsdtqyvckrtlvnrgwgtgclewgkgslvtcakf
acskkmtgksiqpenleyrimlsvhgsqhsgmivndtghetdenrakveitpnspraeat
lggfgslgldceprtgldfsdlyyltmnnkhwlvhkewfhdiplpwhagadtgtphwnnk
ealvefkdahakrqtvvvlgsqegavhtalagaleaemdgakgrlssghlkcrlkmdklr
lkgvsyslctaaftftkipaetlhgtvtvevqyagtdgpckvpaqmavdmqtltpvgrli
tanpvitestenskmmleldppfgdsyivigvgekkithhwhrsgstigkhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7bpkA (A:)
mircigvsnrdfvegmsggtwvdvvlehggcvtvmaqdkptvdielvtttvsnmaevrsy
cyeasisdmasdsrcptqgeayldkqsdtqyvckrtlvnrgwgtgclewgkgslvtcakf
acskkmtgksiqpenleyrimlsvhgsqhsgmivndtghetdenrakveitpnspraeat
lggfgslgldceprtgldfsdlyyltmnnkhwlvhkewfhdiplpwhagadtgtphwnnk
ealvefkdahakrqtvvvlgsqegavhtalagaleaemdgakgrlssghlkcrlkmdklr
lkgvsyslctaaftftkipaetlhgtvtvevqyagtdgpckvpaqmavdmqtltpvgrli
tanpvitestenskmmleldppfgdsyivigvgekkithhwhrs

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7bpkB (B:)
mircigvsnrdfvegmsggtwvdvvlehggcvtvmaqdkptvdielvtttvsnmaevrsy
cyeasisdmasdsrcptqgeayldkqsdtqyvckrtlvnrgwgtgclewgkgslvtcakf
acskkmtgksiqpenleyrimlsvhgsqhsgmivndtghetdenrakveitpnspraeat
lggfgslgldceprtgldfsdlyyltmnnkhwlvhkewfhdiplpwhagadtgtphwnnk
ealvefkdahakrqtvvvlgsqegavhtalagaleaemdgakgrlssghlkcrlkmdklr
lkgvsyslctaaftftkipaetlhgtvtvevqyagtdgpckvpaqmavdmqtltpvgrli
tanpvitestenskmmleldppfgdsyivigvgekkithhwhrsgstigkhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7bpkB (B:)
mircigvsnrdfvegmsggtwvdvvlehggcvtvmaqdkptvdielvtttvsnmaevrsy
cyeasisdmasdsrcptqgeayldkqsdtqyvckrtlvnrgwgtgclewgkgslvtcakf
acskkmtgksiqpenleyrimlsvhgsqhsgmivndtghetdenrakveitpnspraeat
lggfgslgldceprtgldfsdlyyltmnnkhwlvhkewfhdiplpwhagadtgtphwnnk
ealvefkdahakrqtvvvlgsqegavhtalagaleaemdgakgrlssghlkcrlkmdklr
lkgvsyslctaaftftkipaetlhgtvtvevqyagtdgpckvpaqmavdmqtltpvgrli
tanpvitestenskmmleldppfgdsyivigvgekkithhwhrs

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7bpkC (C:)
evqlvesgggvvqpgrslrlscaasgftfssyamhwvrqapgkglewvavisydgsnkyy
adsvkgrftisrdnskstlylqmnnlraedtavyycardhlgwssiwsapesfldywgqg
tlvtvss

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7bpkD (D:)
qsvltqppsvsaapgqkvtiscsgsssnignnyvswyqqlpgtapklliydsnkrpsgip
drfsgsksgtsatlgitglqtgdeadyycgtwdsslsvwvfgggtklt

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7bpkH (H:)
evqlvesgggvvqpgrslrlscaasgftfssyamhwvrqapgkglewvavisydgsnkyy
adsvkgrftisrdnskstlylqmnnlraedtavyycardhlgwssiwsapesfldywgqg
tlvtvss

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7bpkL (L:)
qsvltqppsvsaapgqkvtiscsgsssnignnyvswyqqlpgtapklliydsnkrpsgip
drfsgsksgtsatlgitglqtgdeadyycgtwdsslsvwvfgggtklt