PDB entry 7bod

View 7bod on RCSB PDB site
Description: bacterial 30s ribosomal subunit assembly complex state m (body domain)
Deposited on 2021-01-25, released 2021-07-07
The last revision was dated 2021-12-08, with a file datestamp of 2021-12-03.
Experiment type: EM
Resolution: 2.88 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 16S rRNA (body domain of 30S subunit)
    Species: Escherichia coli (strain K12) [TaxId:83333]
  • Chain 'D':
    Compound: 30S ribosomal protein S4
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: 30S ribosomal protein S5
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: 30S ribosomal protein S6
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: 30S ribosomal protein S8
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: 30S ribosomal protein S11
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: 30S ribosomal protein S12
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: 30S ribosomal protein S15
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: 30S ribosomal protein S16
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: 30S ribosomal protein S17
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: 30S ribosomal protein S18
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: 30S ribosomal protein S20
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: 30S ribosomal protein S21
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7bodD (D:)
marylgpklklsrregtdlflksgvraidtkckieqapgqhgarkprlsdygvqlrekqk
vrriygvlerqfrnyykeaarlkgntgenllallegrldnvvyrmgfgatraearqlvsh
kaimvngrvvniasyqvspndvvsirekakkqsrvkaalelaeqrekptwlevdagkmeg
tfkrkpersdlsadinehlivelysk

    Sequence, based on observed residues (ATOM records):
    >7bodD (D:)
arylgpklklsrregtdlflksgvraidtkckieqapgqhgarkprlsdygvqlrekqkv
rriygvlerqfrnyykeaarlkgntgenllallegrldnvvyrmgfgatraearqlvshk
aimvngrvvniasyqvspndvvsirekakkqsrvkaalelaeqrekptwlevdagkmegt
fkrkpersdlsadinehlivelysk

  • Chain 'E':
    Sequence, based on SEQRES records:
    >7bodE (E:)
mahiekqagelqekliavnrvsktvkggrifsftaltvvgdgngrvgfgygkarevpaai
qkamekarrnminvalnngtlqhpvkgvhtgsrvfmqpasegtgiiaggamravlevagv
hnvlakaygstnpinvvratidglenmnspemvaakrgksveeilgk

    Sequence, based on observed residues (ATOM records):
    >7bodE (E:)
elqekliavnrvsktvkggrifsftaltvvgdgngrvgfgygkarevpaaiqkamekarr
nminvalnngtlqhpvkgvhtgsrvfmqpasegtgiiaggamravlevagvhnvlakayg
stnpinvvratidglenmnspemvaakrgksveeil

  • Chain 'F':
    Sequence, based on SEQRES records:
    >7bodF (F:)
mrhyeivfmvhpdqseqvpgmierytaaitgaegkihrledwgrrqlaypinklhkahyv
lmnveapqevidelettfrfndavirsmvmrtkhavteaspmvkakderrerrddfanet
addaeagdseeeeee

    Sequence, based on observed residues (ATOM records):
    >7bodF (F:)
mrhyeivfmvhpdqseqvpgmierytaaitgaegkihrledwgrrqlaypinklhkahyv
lmnveapqevidelettfrfndavirsmvmrtkhavteaspmvkak

  • Chain 'H':
    Sequence, based on SEQRES records:
    >7bodH (H:)
msmqdpiadmltrirngqaankaavtmpssklkvaianvlkeegfiedfkvegdtkpele
ltlkyfqgkavvesiqrvsrpglriykrkdelpkvmaglgiavvstskgvmtdraarqag
lggeiicyva

    Sequence, based on observed residues (ATOM records):
    >7bodH (H:)
smqdpiadmltrirngqaankaavtmpssklkvaianvlkeegfiedfkvegdtkpelel
tlkyfqgkavvesiqrvsrpglriykrkdelpkvmaglgiavvstskgvmtdraarqagl
ggeiicyva

  • Chain 'K':
    Sequence, based on SEQRES records:
    >7bodK (K:)
makapirarkrvrkqvsdgvahihasfnntivtitdrqgnalgwataggsgfrgsrkstp
faaqvaaercadavkeygiknlevmvkgpgpgrestiralnaagfritnitdvtpiphng
crppkkrrv

    Sequence, based on observed residues (ATOM records):
    >7bodK (K:)
rkqvsdgvahihasfnntivtitdrqgnalgwataggsgfrgsrkstpfaaqvaaercad
avkeygiknlevmvkgpgpgrestiralnaagfritnitdvtpiphngcrppkkrrv

  • Chain 'L':
    Sequence, based on SEQRES records:
    >7bodL (L:)
matvnqlvrkprarkvaksnvpaleacpqkrgvctrvytttpkkpnsalrkvcrvrltng
fevtsyiggeghnlqehsvilirggrvkxlpgvryhtvrgaldcsgvkdrkqarskygvk
rpka

    Sequence, based on observed residues (ATOM records):
    >7bodL (L:)
atvnqlvrkprarkvaksnvpaleacpqkrgvctrvytttpkkpnsalrkvcrvrltngf
evtsyiggeghnlqehsvilirggrvkxlpgvryhtvrgaldcsgvkdrkqarskygvkr
pka

  • Chain 'O':
    Sequence, based on SEQRES records:
    >7bodO (O:)
mslsteatakivsefgrdandtgstevqvalltaqinhlqghfaehkkdhhsrrgllrmv
sqrrklldylkrkdvarytqlierlglrr

    Sequence, based on observed residues (ATOM records):
    >7bodO (O:)
slsteatakivsefgrdandtgstevqvalltaqinhlqghfaehkkdhhsrrgllrmvs
qrrklldylkrkdvarytqlierlglrr

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >7bodP (P:)
mvtirlarhgakkrpfyqvvvadsrnarngrfiervgffnpiasekeegtrldldriahw
vgqgatisdrvaalikevnkaa

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >7bodQ (Q:)
mtdkirtlqgrvvsdkmeksivvaierfvkhpiygkfikrttklhvhdennecgigdvve
irecrplsktkswtlvrvvekavl

    Sequence, based on observed residues (ATOM records):
    >7bodQ (Q:)
kirtlqgrvvsdkmeksivvaierfvkhpiygkfikrttklhvhdennecgigdvveire
crplsktkswtlvrvvekav

  • Chain 'R':
    Sequence, based on SEQRES records:
    >7bodR (R:)
maryfrrrkfcrftaegvqeidykdiatlknyitesgkivpsritgtrakyqrqlaraik
rarylsllpytdrhq

    Sequence, based on observed residues (ATOM records):
    >7bodR (R:)
fcrftaegvqeidykdiatlknyitesgkivpsritgtrakyqrqlaraikrarylsllp
ytdrh

  • Chain 'T':
    Sequence, based on SEQRES records:
    >7bodT (T:)
maniksakkraiqsekarkhnasrrsmmrtfikkvyaaieagdkaaaqkafnemqpivdr
qaakglihknkaarhkanltaqinkla

    Sequence, based on observed residues (ATOM records):
    >7bodT (T:)
aniksakkraiqsekarkhnasrrsmmrtfikkvyaaieagdkaaaqkafnemqpivdrq
aakglihknkaarhkanltaqinkla

  • Chain 'U':
    Sequence, based on SEQRES records:
    >7bodU (U:)
mpvikvrenepfdvalrrfkrscekagvlaevrrrefyekptterkrakasavkrhakkl
arenarrtrly

    Sequence, based on observed residues (ATOM records):
    >7bodU (U:)
epfdvalrrfkrscekagvlaevrrrefyekptterkrakasavkrhakkla