PDB entry 7bfp

View 7bfp on RCSB PDB site
Description: structure of the integrator cleavage module with ints4/9/11
Deposited on 2021-01-04, released 2021-03-24
The last revision was dated 2021-03-31, with a file datestamp of 2021-03-26.
Experiment type: EM
Resolution: 3.5 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Integrator complex subunit 9
    Species: Homo sapiens [TaxId:9606]
    Gene: INTS9, RC74
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Integrator complex subunit 11
    Species: Homo sapiens [TaxId:9606]
    Gene: INTS11, CPSF3L, RC68
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5TA45
      • conflict (491)
  • Chain 'C':
    Compound: Integrator complex subunit 4
    Species: Homo sapiens [TaxId:9606]
    Gene: INTS4, MSTP093
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: unknown
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7BFP (0-35)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7bfpA (A:)
    mklyclsghptlpcnvlkfksttimldcgldmtstlnflplplvqsprlsnlpgwslkdg
    nafldkelkecsghvfvdsvpefclpetelidlstvdvilisnyhcmmalpyitehtgft
    gtvyateptvqigrllmeelvnfiervpkaqsaslwknkdiqrllpsplkdavevstwrr
    cytmqevnsalskiqlvgysqkielfgavqvtplssgyalgssnwiiqshyekvsyvsgs
    slltthpqpmdqaslknsdvlvltgltqiptanpdgmvgefcsnlaltvrnggnvlvpcy
    psgviydlleclyqyidsaglssvplyfispvansslefsqifaewlchnkqskvylpep
    pfphaeliqtnklkhypsihgdfsndfrqpcvvftghpslrfgdvvhfmelwgksslntv
    iftepdfsylealapyqplamkciycpidtrlnfiqvskllkevqplhvvcpeqytqppp
    aqshrmdlmidcqppamsyrraevlalpfkrryekieimpeladslvpmeikpgislatv
    savlhtkdnkhllqppprpaqptsgkkrkrvsddvpdckvlkpllsgsipveqfvqtlek
    hgfsdikvedtakghivllqeaetliqieedsthiicdndemlrvrlrdlvlkflqkf
    

    Sequence, based on observed residues (ATOM records):
    >7bfpA (A:)
    mklyclsghptlpcnvlkfksttimldcgldmtstlnflplplvqsprlsnlpgwslkdg
    nldkelkecsghvfvdsvpefclpetelidlstvdvilisnyhcmmalpyitehtgftgt
    vyateptvqigrllmeelvnfiervpkaqsaslwknkdiqrllpsplkdavevstwrrcy
    tmqevnsalskiqlvgysqkielfgavqvtplssgyalgssnwiiqshyekvsyvsgssl
    ltthpqpmdqaslknsdvlvltgltqiptanpdgmvgefcsnlaltvrnggnvlvpcyps
    gviydlleclyqyidsaglssvplyfispvansslefsqifklkhypsihgdfsndfrqp
    cvvftghpslrfgdvvhfmelwgksslntviftepdfsylealapyqplamkciycpidt
    rlnfiqvskllkevqplhvvcpeqytqpppaqshrmdlmidcqppamsyrraevlalpfk
    rryekieimpeladslvpmeikpgislatvsavlhtkdnkhllqpp
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7bfpB (B:)
    mdekttgwrgghvveglageleqlrarlehhpqgqrepppsgadpmpeirvtplgagqdv
    grscilvsiagknvmldcgmhmgfnddrrfpdfsyitqngrltdfldcviishfhldhcg
    alpyfsemvgydgpiymthptqaicpilledyrkiavdkkgeanfftsqmikdcmkkvva
    vhlhqtvqvddeleikayyaghvlgaamfqikvgsesvvytgdynmtpdrhlgaawidkc
    rpnllitestyattirdskrcrerdflkkvhetverggkvlipvfalgraqelcilletf
    wermnlkvpiyfstgltekanhyyklfipwtnqkirktfvqrnmfefkhikafdrafadn
    pgpmvvfatpgmlhagqslqifrkwagneknmvimpgycvqgtvghkilsgqrklemegr
    qvlevkmqveymsfsahadakgimqlvgqaepesvllvhgeakkmeflkqkieqelrvnc
    ympangetvtlltspsipvgislgllkremaqgllpeakkprllhgtlimkdsnfrlvss
    eqalkelglaehqlrftcrvhlhdtrkeqetalrvyshlksvlkdhcvqhlpdgsvtves
    vllqaaapsedpgtkvllvswtyqdeelgsfltsllkkglpqaps
    

    Sequence, based on observed residues (ATOM records):
    >7bfpB (B:)
    peirvtplgagqdvgrscilvsiagknvmldcgmhmgfnddrrfpdfsyitqngrltdfl
    dcviishfhldhcgalpyfsemvgydgpiymthptqaicpilledyrkiavdkeanffts
    qmikdcmkkvvavhlhqtvqvddeleikayyaghvlgaamfqikvgsesvvytgdynmtp
    drhlgaawidkcrpnllitestyattirdskrcrerdflkkvhetverggkvlipvfalg
    raqelcilletfwermnlkvpiyfstgltekanhyyklfipwtnqkirktfvqrnmfefk
    hikafdrafadnpgpmvvfatpgmlhagqslqifrkwagneknmvimpgycvqgtvghki
    lsgqrklemegrqvlevkmqveymsfsahadakgimqlvgqaepesvllvhgeakkmefl
    kqkieqelrvncympangetvtlltspsipvgislgllkremaqgllpprllhgtlimkd
    snfrlvsseqalkelgla
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7bfpC (C:)
    mhhhhhhhhppsgadpmaahlkkrvyeeftkvvqpqeeiatkklrltkpsksaalhidlc
    katspadalqyllqfarkpveaesvegvvrillehyykendpsvrlkiasllgllsktag
    fspdcimddainilqnekshqvlaqlldtllaigtklpenqaiqmrlvdvackhltdtsh
    gvrnkclqllgnlgsleksvtkdaeglaardvqkiigdyfsdqdprvrtaaikamlqlhe
    rglklhqtiynqackllsddyeqvrsaavqliwvvsqlypesivpipssneeirlvddaf
    gkichmvsdgswvvrvqaakllgsmeqvsshfleqtldkklmsdlrrkrtaherakelys
    sgefssgrkwgddapkeevdtgavnliesgacgafvhgledemyevriaavealcmlaqs
    spsfaekcldflvdmfndeieevrlqsihtmrkisnnitlredqldtvlavledssrdir
    ealhellcctnvstkegihlalvellknltkyptdrdsiwkclkflgsrhptlvlplvpe
    llsthpffdtaepdmddpayiavlvlifnaaktcptmpalfsdhtfrhyaylrdslshlv
    palrlpgrklvssavspsiipqedpsqqflqqslervyslqhldpqgaqelleftirdlq
    rlgelqselagvadfsatylrcqlllikalqeklwnvaaplylkqsdlasaaakqimeet
    ykmefmysgvenkqvviihhmrlqakalqlivtarttrgldplfgmcekflqevdffqry
    fiadlphlqdsfvdklldlmprlmtskpaevvkilqtmlrqsaflhlplpeqihkasati
    iepagesdnplrftsglvvaldvdatlehvqdpqntvkvqvlypdgqaqmihpkpadfrn
    pgpgrhrlitqvylshtawteacqvevrlllaynssaripkcpwmeggemspqvetsieg
    tipfskpvkvyimpkparr
    

    Sequence, based on observed residues (ATOM records):
    >7bfpC (C:)
    ksaalhidlckatspadalqyllqfarkpveaesvegvvrillehyykendpsvrlkias
    llgllsktagfspdcimddainilqnekshqvlaqlldtllaigtklpenqaiqmrlvdv
    ackhltdtshgvrnkclqllgnlgslrdvqkiigdyfsdqdprvrtaaikamlqlhergl
    klhqtiynqackllsddyeqvrsaavqliwvvsqlypesivpipssneeirlvddafgki
    chmvsdgswvvrvqaakllgsmeqvsshfleqtldkklmsdlrrkrtaherakelyss
    

  • Chain 'U':
    Sequence; same for both SEQRES and ATOM records:
    >7bfpU (U:)
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