PDB entry 7b3d

View 7b3d on RCSB PDB site
Description: structure of elongating sars-cov-2 rna-dependent rna polymerase with amp at position -4 (structure 3)
Deposited on 2020-11-30, released 2020-12-23
The last revision was dated 2021-02-03, with a file datestamp of 2021-01-29.
Experiment type: EM
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: SARS-CoV-2 RNA-dependent RNA polymerase nsp12
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: rep, 1a-1b
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: SARS-CoV-2 NSP8
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: rep, 1a-1b
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: SARS-CoV-2 NSP7
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: rep, 1a-1b
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: RNA (5'-r(p*cp*up*ap*cp*gp*cp*ap*gp*up*g)-3')
    Species: Severe acute respiratory syndrome coronavirus 2, synthetic [TaxId:2697049]
  • Chain 'T':
    Compound: RNA (5'-r(p*up*gp*cp*ap*cp*up*gp*cp*gp*up*ap*g)-3')
    Species: Severe acute respiratory syndrome coronavirus 2, synthetic [TaxId:2697049]
  • Heterogens: ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7b3dA (A:)
snasadaqsflnrvcgvsaarltpcgtgtstdvvyrafdiyndkvagfakflktnccrfq
ekdeddnlidsyfvvkrhtfsnyqheetiynllkdcpavakhdffkfridgdmvphisrq
rltkytmadlvyalrhfdegncdtlkeilvtynccdddyfnkkdwydfvenpdilrvyan
lgervrqallktvqfcdamrnagivgvltldnqdlngnwydfgdfiqttpgsgvpvvdsy
ysllmpiltltraltaeshvdtdltkpyikwdllkydfteerlklfdryfkywdqtyhpn
cvnclddrcilhcanfnvlfstvfpptsfgplvrkifvdgvpfvvstgyhfrelgvvhnq
dvnlhssrlsfkellvyaadpamhaasgnllldkrttcfsvaaltnnvafqtvkpgnfnk
dfydfavskgffkegssvelkhfffaqdgnaaisdydyyrynlptmcdirqllfvvevvd
kyfdcydggcinanqvivnnldksagfpfnkwgkarlyydsmsyedqdalfaytkrnvip
titqmnlkyaisaknrartvagvsicstmtnrqfhqkllksiaatrgatvvigtskfygg
whnmlktvysdvenphlmgwdypkcdrampnmlrimaslvlarkhttccslshrfyrlan
ecaqvlsemvmcggslyvkpggtssgdattayansvfnicqavtanvnallstdgnkiad
kyvrnlqhrlyeclyrnrdvdtdfvnefyaylrkhfsmmilsddavvcfnstyasqglva
siknfksvlyyqnnvfmseakcwtetdltkgphefcsqhtmlvkqgddyvylpypdpsri
lgagcfvddivktdgtlmierfvslaidaypltkhpnqeyadvfhlylqyirklhdeltg
hmldmysvmltndntsrywepefyeamytphtvlq

    Sequence, based on observed residues (ATOM records):
    >7b3dA (A:)
vyrafdiyndkvagfakflkrltkytmadlvyalrhfdegncdtlkeilvtynccdddyf
nkkdwydfvenpdilrvyanlgervrqallktvqfcdamrnagivgvltldnqdlngnwy
dfgdfiqttpgsgvpvvdsyysllmpiltltraltaeshvdtdltkpyikwdllkydfte
erlklfdryfkywdqtyhpncvnclddrcilhcanfnvlfstvfpptsfgplvrkifvdg
vpfvvstgyhfrelgvvhnqdvnlsfkellvyaadpamhaasgnllldkrttcfsvaalt
nnvafqtvkpgnfnkdfydfavskgffkegssvelkhfffaqdgnaaisdydyyrynlpt
mcdirqllfvvevvdkyfdcydggcinanqvivnnldksagfpfnkwgkarlyydsmsye
dqdalfaytkrnviptitqmnlkyaisaknrartvagvsicstmtnrqfhqkllksiaat
rgatvvigtskfyggwhnmlktvysdvenphlmgwdypkcdrampnmlrimaslvlarkh
ttccslshrfyrlanecaqvlsemvmcggslyvkpggtssgdattayansvfnicqavta
nvnallstdgnkiadkyvrnlqhrlyeclyrnrdvdtdfvnefyaylrkhfsmmilsdda
vvcfnstyasqglvasiknfksvlyyqnnvfmseakcwtetdltkgphefcsqhtmlvkq
gddyvylpypdpsrilgagcfvddivktdgtlmierfvslaidaypltkhpnqeyadvfh
lylqyirklhdeltdntsrywepefyeamytpht

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7b3dB (B:)
snaaiasefsslpsyaafataqeayeqavangdsevvlkklkkslnvaksefdrdaamqr
klekmadqamtqmykqarsedkrakvtsamqtmlftmlrkldndalnniinnardgcvpl
niiplttaaklmvvipdyntykntcdgttftyasalweiqqvvdadskivqlseismdns
pnlawplivtalransavklq

    Sequence, based on observed residues (ATOM records):
    >7b3dB (B:)
edkrakvtsamqtmlftmlrkldndalnniinnardgcvplniiplttaaklmvvipdyn
tykntcdgttftyasalweiqqvvdadskivqlseismdnspnlawplivtalra

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7b3dC (C:)
snaskmsdvkctsvvllsvlqqlrvesssklwaqcvqlhndillakdtteafekmvslls
vllsmqgavdinklceemldnratlq

    Sequence, based on observed residues (ATOM records):
    >7b3dC (C:)
skmsdvkctsvvllsvlqqlrvesssklwaqcvqlhndillakdtteafekmvsllsvll
sm

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.