PDB entry 7ard

View 7ard on RCSB PDB site
Description: Cryo-EM structure of Polytomella Complex-I (complete composition)
Class: electron transport
Keywords: Complex-I, ELECTRON TRANSPORT
Deposited on 2020-10-23, released 2021-12-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-12-08, with a file datestamp of 2021-12-03.
Experiment type: EM
Resolution: 3.11 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: nd3
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-153)
• Chain 'B':
  Compound: psst
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-163)
• Chain 'C':
  Compound: nd9
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-216)
• Chain 'D':
  Compound: nd7
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-394)
  Domains in SCOPe 2.08: d7ardd_
• Chain 'E':
  Compound: 24 kDa
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-275)
• Chain 'F':
  Compound: 51 kDa
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-468)
• Chain 'G':
  Compound: 75 kDa
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-719)
• Chain 'H':
  Compound: nd1
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-292)
• Chain 'I':
  Compound: tyky
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-228)
• Chain 'J':
  Compound: nd6
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-144)
• Chain 'K':
  Compound: nd4l
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-126)
• Chain 'L':
  Compound: nd5
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-535)
• Chain 'M':
  Compound: nd4
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-437)
• Chain 'N':
  Compound: nd2
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-374)
• Chain 'O':
  Compound: c1-fdx
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-199)
• Chain 'P':
  Compound: 39 kDa
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-369)
• Chain 'Q':
  Compound: 18 kDa
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-184)
• Chain 'R':
  Compound: 13 kDa
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-131)
• Chain 'S':
  Compound: b8
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-97)
• Chain 'T':
  Compound: sdap1
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-122)
• Chain 'U':
  Compound: sdap2
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-121)
• Chain 'V':
  Compound: b13
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-158)
• Chain 'W':
  Compound: b14
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-136)
• Chain 'X':
  Compound: pgiv
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-99)
• Chain 'Y':
  Compound: b14.7
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-205)
• Chain 'Z':
  Compound: b16.6
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-141)
• Chain 'a':
  Compound: mwfe
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-70)
• Chain 'b':
  Compound: b9
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-53)
• Chain 'c':
  Compound: kfyi
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-109)
• Chain 'd':
  Compound: B14.5b
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-82)
• Chain 'e':
  Compound: 15 kDa
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-74)
• Chain 'f':
  Compound: mnll
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-120)
• Chain 'g':
  Compound: esss
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-171)
• Chain 'h':
  Compound: nuop4
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-80)
• Chain 'i':
  Compound: nuop5
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-127)
• Chain 'j':
  Compound: aggg
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-86)
• Chain 'k':
  Compound: b12
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-54)
• Chain 'l':
  Compound: ashi
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-150)
• Chain 'm':
  Compound: b15
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-137)
• Chain 'n':
  Compound: Complex I-B22
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A024FSS5 (0-120)
• Chain 'o':
  Compound: b18
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-84)
• Chain 'p':
  Compound: pdsw
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-155)
• Chain 'q':
  Compound: b17.2
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-154)
• Chain 'r':
  Compound: B14.5a
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-120)
• Chain 's':
  Compound: nuop7
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-117)
• Chain 't':
  Compound: nuop8
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-133)
• Chain 'u':
  Compound: unknown
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-49)
• Chain 'w':
  Compound: unknown
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-40)
• Chain 'x':
  Compound: cal
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-279)
• Chain 'y':
  Compound: ca2
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-309)
• Chain 'z':
  Compound: ca3
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 7ARD (0-226)
• Heterogens: PC7, SF4, FES, FMN, PTY, CDL, NDP, ZN, 8Q1, HOH

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >7ardD (D:)
  mkpltpskvsnftinfgpqhpaahgvlrlvlemdgeiikradphigllhrgteklleykt
  ynqgipyfdrldyvsmmcmehsyvlaieqllnvavplrgqyirvlfseitrimnhilait
  chsmdvgaltpflwafeereklfefyervsgarmhaayfrvggvaqdlpigllrdiydws
  rqfasrvdemeelltgnriwkertidvglvtaqqawdwgcsgpilrgsgidwdlrknqpy
  dvygrmdfnvpiaghgdcydrylvrvqemreslriiyqclnempdglyktpdqkvsppsr
  gqmkqsmeslihhfklfsegyhvpagetyraveapkgefgvylvsrggnrpyrckirspg
  yahlqmldmvakgamladvvtiigtldvvfgeidr
  

  
  
• Chain 'E':
  No sequence available.
  
  
• Chain 'F':
  No sequence available.
  
  
• Chain 'G':
  No sequence available.
  
  
• Chain 'H':
  No sequence available.
  
  
• Chain 'I':
  No sequence available.
  
  
• Chain 'J':
  No sequence available.
  
  
• Chain 'K':
  No sequence available.
  
  
• Chain 'L':
  No sequence available.
  
  
• Chain 'M':
  No sequence available.
  
  
• Chain 'N':
  No sequence available.
  
  
• Chain 'O':
  No sequence available.
  
  
• Chain 'P':
  No sequence available.
  
  
• Chain 'Q':
  No sequence available.
  
  
• Chain 'R':
  No sequence available.
  
  
• Chain 'S':
  No sequence available.
  
  
• Chain 'T':
  No sequence available.
  
  
• Chain 'U':
  No sequence available.
  
  
• Chain 'V':
  No sequence available.
  
  
• Chain 'W':
  No sequence available.
  
  
• Chain 'X':
  No sequence available.
  
  
• Chain 'Y':
  No sequence available.
  
  
• Chain 'Z':
  No sequence available.
  
  
• Chain 'a':
  No sequence available.
  
  
• Chain 'b':
  No sequence available.
  
  
• Chain 'c':
  No sequence available.
  
  
• Chain 'd':
  No sequence available.
  
  
• Chain 'e':
  No sequence available.
  
  
• Chain 'f':
  No sequence available.
  
  
• Chain 'g':
  No sequence available.
  
  
• Chain 'h':
  No sequence available.
  
  
• Chain 'i':
  No sequence available.
  
  
• Chain 'j':
  No sequence available.
  
  
• Chain 'k':
  No sequence available.
  
  
• Chain 'l':
  No sequence available.
  
  
• Chain 'm':
  No sequence available.
  
  
• Chain 'n':
  No sequence available.
  
  
• Chain 'o':
  No sequence available.
  
  
• Chain 'p':
  No sequence available.
  
  
• Chain 'q':
  No sequence available.
  
  
• Chain 'r':
  No sequence available.
  
  
• Chain 's':
  No sequence available.
  
  
• Chain 't':
  No sequence available.
  
  
• Chain 'u':
  No sequence available.
  
  
• Chain 'w':
  No sequence available.
  
  
• Chain 'x':
  No sequence available.
  
  
• Chain 'y':
  No sequence available.
  
  
• Chain 'z':
  No sequence available.