PDB entry 7apx

View 7apx on RCSB PDB site
Description: yeast tho-sub2 complex
Deposited on 2020-10-20, released 2020-12-02
The last revision was dated 2020-12-02, with a file datestamp of 2020-11-27.
Experiment type: EM
Resolution: 3.4 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: THO complex subunit 2,Tho2
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: YNL139C
    Database cross-references and differences (RAF-indexed):
    • Uniprot P53552
    • PDB 7APX (1601-1619)
  • Chain 'B':
    Compound: THO complex subunit HPR1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: HPR1, YDR138W, YD9302.14
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: THO complex subunit THP2
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: THP2, YHR167W
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: THO complex subunit MFT1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: MFT1, YML062C
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Protein TEX1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: TEX1, YNL253W, N0860
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: ATP-dependent RNA helicase SUB2
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: SUB2, YDL084W
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7apxA (A:)
    gaasmaeqtllsklnalsqkvippaspsqasilteevirnwpersktlcsdftalesnde
    kedwlrtlfielfdfinkndensplklsdvasftnelvnherqvsqasivgkmfiavsst
    vpnindlttislcklipslheelfkfswisskllnkeqttllrhllkkskyelkkynllv
    ensvgygqlvallilayydpdnfskvsaylkeiyhimgkysldsirtldvilnvssqfit
    egykffiallrksdswpsshvannsnysslneggnmiaaniisfnlsqyneevdkenyer
    ymdmccillkngfvnfysiwdnvkpemeflqeyiqnleteleeestkgvenplamaaals
    tenetdednalvvnddvnmkdkiseetnadieskgkqktqqdillfgkikllerllihgc
    vipvihvlkqypkvlyvseslsrylgrvfeyllnplytsmtssgeskdmatalmitridn
    gilahkprlihkykthepfeslelnssyvfyysewnsnltpfasvndlfenshiylsiig
    pylgriptllskisrigvadiqknhgseslhvtidkwidyvrkfifpatsllqnnpiats
    evyelmkffpfekryfiynemmtklsqdilplkvsfnkaereaksilkalsidtiakesr
    rfaklistnplaslvpavkqienydkvselvvyttkyfndfaydvlqfvlllrltynrpa
    vqfdgvnqamwvqrlsifiaglakncpnmdisniityilktlhngniiavsilkeliitv
    ggirdlnevnmkqllmlnsgsplkqyarhliydfrddnsvissrltsfftdqsaiseiil
    llytlnlkantqnshykilstrcdemntllwsfielikhclkgkafeenvlpfvelnnrf
    hlstpwtfhiwrdyldnqlnsnenfsideliegaefsdvdltkiskdlfttfwrlslydi
    hfdkslyderknalsgentghmsnrkkhliqnqikdilvtgishqrafkktsefiseksn
    vwnkdcgedqikiflqncvvprvlfspsdalfssffifmafrtenlmsilntcitsnilk
    tllfcctsseagnlglfftdvlkklekmrlngdfndqasrklyewhsviteqvidllsek
    nymsirngiefmkhvtsvfpvvkahiqlvyttleenlineerediklpssalighlkarl
    kdaleldefctlteeeaeqkriremeleeiknyetacqneqkqvalrkqlelnksqrlqn
    dppksvasgsaglnskdrytysrnepviptkpsssqwsyskvtrhvddinhylatnhlqk
    aislvenddetrnlrklskqnmpifdfrnstleiferyfrtliqnpqnpdfaekidslkr
    yiknisrepypdttssyseaaapeytkrssrysgnaggkdgygssnyrgpsndrsapkni
    kpissyahkrselptrpsksktyndrsralrptgpdrgdgfdqrdnrlreeykknssqrs
    qlrfpekpfqegkdsskanpyqassykrdspseneekpnkrfkkdetirnkfqtqdyrnt
    rdsgaahranenqryngnrksntqalpqgpkggnyvsryqrxxxxxxxxxxxxxxxxxxx
    

    Sequence, based on observed residues (ATOM records):
    >7apxA (A:)
    alsqkvippaspsqasilteevirnwpersktlcsdftalesndekedwlrtlfielfdf
    idvasftnelvnherqvsqasivgkmfiavsstvpnindlttislcklipslheelfkfs
    wisskllnkeqttllrhllkkskyelkkynllvensvgygqlvallilayydpdnfskvs
    aylkeiyhimgkysldsirtldvilnvssqfitegykffiallrksdswpsshvannsny
    sslneggnmiaaniisfnlsqyneevdkenyerymdmccillkngfvnfysiwdnvkpem
    eflqeyiqnleteleeestkgvenplamaaalsktqqdillfgkikllerllihgcvipv
    ihvlkqypkvlyvseslsrylgrvfeyllnplytsmtssgeskdmatalmitridngila
    hkprlihkykthepfeslelnssyvfyysewnsnltpfasvndlfenshiylsiigpylg
    riptllskisrigvadiqknhgseslhvtidkwidyvrkfifpatsllqnnpiatsevye
    lmkffpfekryfiynemmtklsqdilplkvsfnkaereaksilkalsidtiakesrrfak
    listnplaslvpavkqienydkvselvvyttkyfndfaydvlqfvlllrltynrpavqfd
    gvnqamwvqrlsifiaglakncpnmdisniityilktlhngniiavsilkeliitvggir
    dlnevnmkqllmlnsgsplkqyarhliydfrddnsvissrltsfftdqsaiseiilllyt
    lnlkantqnshykilstrcdemntllwsfielikhclkgkafeenvlpfvelnnrfhlst
    pwtfhiwrdyldnqlnsnenfsideliegaefsdvdltkiskdlfttfwrlslydihfdk
    slyderknalskhliqnqikdilvtgishqrafkktsefiseksnvwedqikiflqncvv
    prvlfspsdalfssffifmafrtenlmsilntcitsnilktllfcctsseagnlglfftd
    vlkklekmrlngdfndqasrklyewhsviteqvidllseknymsirngiefmkhvtsvfp
    vvkahiqlvyttleenlineerediklpssalighlkarlkdaleldefctlteeeaeqk
    riremexxxxxxxxxxxxxxxxxxx
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7apxB (B:)
    msnteeliqnsigflqktfkalpvsfdsirheplpssmlhasvlnfewepleknisaihd
    rdslidiilkrfiidsmtnaiedeeennlekgllnscigldfvynsrfnrsnpaswgntf
    felfstiidllnspstflkfwpyaesriewfkmntsvepvslgesnlisykqplyeklrh
    wndilaklenndilntvkhynmkyklenflsellpineesnfnrsasisalqesdnewnr
    sareresnrssdvifaadynfvfyhliicpiefafsdleykndvdrslsplldaileiee
    nfyskikmnnrtrysleealnteyyanydvmtpklpvymkhsnamkmdrnefwanlqnik
    esddytlrptimdislsnttclykqltqedddyyrkqfilqlcfttnlirnlissdetrn
    fykscylrenplsdidfenldevnkkrglnlcsyicdnrvlkfykikdpdfyrvirklms
    sdekfttakidgfkefqnfriskekipppafdetfkkftfikmgnklinnvwkiptgldk
    ieqevkkpegvyeaaqakweskissetsggeakdeiirqwqtlrflrsrylfdfdkvnek
    tgvdglfeeprkvealddsfkekllykinqehrkklqdareykigkerkkraleeeasfp
    ereqkiksqrinsasqtegdelkseqtqpkgeiseentkikssevssqdpdsgvagefap
    

    Sequence, based on observed residues (ATOM records):
    >7apxB (B:)
    snteeliqnsigflqktfkalpvsfdsirheplpssmlhasvlnfewepleknisaihdr
    dslidiilkrfiidsmtlekgllnscigldfvynsrfnrsnpaswgntffelfstiidll
    nspstflkfwpyaesriewfkmntsvepvslgesnlisykqplyeklrhwndilaklenn
    dilntvkhynmkyklenflsellpineesnfnrsasisalqesdnewnrsssdvifaady
    nfvfyhliicpiefafsdleykndvdrslsplldaileieenfyskikmnnrtrysleea
    lnteyyanydvmtpklpvymkhsnamkmdrnefwanlqnikesddytlrptimdislsnt
    tclykqltqedddyyrkqfilqlcfttnlirnlissdetrnfykscylrenplsdidfen
    ldevnkkrglnlcsyicdnrvlkfykikdpdfyrvirklmssdekfttakidgfkefqnf
    riskekipppafdetfkkftfikmgnklinnvwkiptgldkieqevkkpegvyeiirqwq
    tlrflrsrylfdfdkvnektgvd
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7apxC (C:)
    mtkeegrtyfeslceeeqslqesqthllnildilsvladprssddllteslkklpdlhre
    linssirlrydkyqtreaqlledtktgrdvaagvqnpksiseyystfehlnrdtlryinl
    lkrlsvdlakqvevsdpsvtvyemdkwvpseklqgileqycapdtdirgvdaqiknyldq
    ikmarakfglenkyslkerlstltkelnhwrkewddiemlmfgddahsmkkmiqkidslk
    seinapsesypvdkegdivle
    

    Sequence, based on observed residues (ATOM records):
    >7apxC (C:)
    grtyfeslceeeqslqesqthllnildilsvladpddllteslkklpdlhrelinssirl
    rydkyqtreaqlledtktgrdvaagvqnpksiseyystfehlnrdtlryinllkrlsvdl
    akqvevsdpsvtvyemdkwvpseklqgileqycapdtdirgvdaqiknyldqikmarakf
    glenkyslkerlstltkelnhwrkewddiemlmfgddahsmkkmiqk
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7apxD (D:)
    mplsqkqidqvrtkvhysevdtpfnkyldilgkvtkltgsiingtlsnddskieklteqn
    isqlkesahlrfldlqssidtkkvadenwetcqqetlaklenlkdklpdiksihsklllr
    igklqglydsvqvinreveglsegrtslvvtraewekelgtdlvkflieknylklvdpgl
    kkdsseeryriyddfskgpkelesinasmksdienvrqevssykekwlrdaeifgkitsi
    fkeellkrdgllneaegdnidedyesdedeerkerfkrqrsmvevntienvdekeesdhe
    yddqedeeneeeddmevdvedikednevdgessqqednsrqgnneetdketgvieepdav
    ndaeeadsdhssrklggttsdfsasssveevk
    

    Sequence, based on observed residues (ATOM records):
    >7apxD (D:)
    plsqkqidqvrtkvhysevdtpfnkyldilgkvtkltgsiingtlsnddskieklteqni
    sqlkesahlrfldlqssidtkkvadenwetcqqetlaklenlkdklpdiksihsklllri
    gklqglydsvqvinreveglsegrtslvvtraewekelgtdlvkflieiyddfskgpkel
    esinasmksdienvrqevssykekwlrdaeifgkitsifkeellk
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >7apxE (E:)
    mstigavdilnqktitsevaasvtskylqstfskgntshiedkrfihvssrshsrftstp
    itpneilslkfhvsgssmaysrmdgsltvwfikdasfdksvevyipdccgsdklatdlsw
    nptslnqiavvsnsseislllineksltasklrtlslgsktkvntclydplgnwllaatk
    sekiylfdvkkdhssvcslnisdisqedndvvyslawsnggshifigfksgylailkakh
    gilevctkikahtgpiteikmdpwgrnfitgsidgncyvwnmkslcceliindlnsavtt
    ldvchlgkilgictedemvyfydlnsgnllhskslanyktdpvlkfypdkswyimsgknd
    tlsnhfvkneknlitywkdm
    

    Sequence, based on observed residues (ATOM records):
    >7apxE (E:)
    svtskylqstfskgntshiedkrfihvssrshitpneilslkfhvsgssmaysrmdgslt
    vwfikdasfdksvevyipdccgsdklatdlswnptslnqiavvsnsseislllinekslt
    asklrtlslgsktkvntclydplgnwllaatksekiylfdvkkdhssvcslnisdisqed
    ndvvyslawsnggshifigfksgylailkakhgilevctkikahtgpiteikmdpwgrnf
    itgsidgncyvwnmkslcceliindlnsavttldvchlgkilgictedemvyfydlnsgn
    llhskslanyktdpvlkfypdkswyimsgkndtlsnhfvkneknlity
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >7apxF (F:)
    gaasdkkgsyvgihstgfkdfllkpelsraiidcgfehpsevqqhtipqsihgtdvlcqa
    ksglgktavfvlstlqqldpvpgevavvvicnarelayqirneylrfskympdvktavfy
    ggtpiskdaellknkdtaphivvatpgrlkalvrekyidlshvknfvidecdkvleeldm
    rrdvqeifratprdkqvmmfsatlsqeirpicrrflqnpleifvddeakltlhglqqyyi
    kleereknrklaqllddlefnqviifvksttraneltkllnasnfpaitvhghmkqeeri
    arykafkdfekricvstdvfgrgidierinlainydltneadqylhrvgragrfgtkgla
    isfvsskedeevlakiqerfdvkiaefpeegidpstylnn
    

    Sequence, based on observed residues (ATOM records):
    >7apxF (F:)
    tgfkdfllkpelsraiidcgfehpsevqqhtipqsihgtdvlcqaksglgktavfvlstl
    qqldpvpgevavvvicnarelayqirneylrfskympdvktavfyggtpiskdaellknk
    dtaphivvatpgrlkalvrekyidlshvknfvidecdkvleeldmrrdvqeifratprdk
    qvmmfsatlsqeiqnpglqqyyikleereknrklaqllddlefnqviifvksttranelt
    kllnasnfpaitvhghmkqeeriarykafkdfekricvstdvfgrgidierinlainydl
    tneadqylhrvgragrfgtkglaisfvsskedeevlakiqerfdvkiaefpeegidpsty
    l