PDB entry 7agk

View 7agk on RCSB PDB site
Description: Crystal structure of E. coli SF kinase (YihV) in complex with product sulfofructose phosphate (SFP)
Class: transferase
Keywords: sulfofructose, sulfoquinovose, SF kinase, sulfoglycolysis, sulfoEMP pathway, TRANSFERASE
Deposited on 2020-09-22, released 2021-04-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-04-14, with a file datestamp of 2021-04-09.
Experiment type: XRAY
Resolution: 2.97 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Sulfofructose kinase
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: yihV, b3883, JW5568
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7agka_
  • Chain 'B':
    Compound: Sulfofructose kinase
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: yihV, b3883, JW5568
    Database cross-references and differences (RAF-indexed):
    • Uniprot P32143 (0-297)
      • expression tag (298)
    Domains in SCOPe 2.08: d7agkb1, d7agkb2
  • Chain 'C':
    Compound: Sulfofructose kinase
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: yihV, b3883, JW5568
    Database cross-references and differences (RAF-indexed):
    • Uniprot P32143 (0-297)
      • expression tag (298-299)
    Domains in SCOPe 2.08: d7agkc1, d7agkc2
  • Chain 'D':
    Compound: Sulfofructose kinase
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: yihV, b3883, JW5568
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7agkd_
  • Heterogens: RAH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7agkA (A:)
mirvacvgitvmdriyyveglptesgkyvarnytevgggpaataavaaarlgaqvdfigr
vgdddtgnsllaeleswgvntrytkrynqakssqsaimvdtkgeriiinypspdllpdae
wleeidfsqwdvvladvrwhdgakkaftlarqagvmtvldgditpqdiselvalsdhaaf
sepglarltgvkemasalkqaqtltnghvyvtqgsagcdwlenggrqhqpafkvdvvdtt
gagdvfhgalavalatsgdlaesvrfasgvaalkctrpggragipdcdqtrsflslfvle
hhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7agkA (A:)
mirvacvgitvmdriyyveglptesgkyvarnytevgggpaataavaaarlgaqvdfigr
vgdddtgnsllaeleswgvntrytkrynqakssqsaimvdtkgeriiinypspdllpdae
wleeidfsqwdvvladvrwhdgakkaftlarqagvmtvldgditpqdiselvalsdhaaf
sepglarltgvkemasalkqaqtltnghvyvtqgsagcdwlenggrqhqpafkvdvvdtt
gagdvfhgalavalatsgdlaesvrfasgvaalkctrpggragipdcdqtrsflslfv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7agkB (B:)
mirvacvgitvmdriyyveglptesgkyvarnytevgggpaataavaaarlgaqvdfigr
vgdddtgnsllaeleswgvntrytkrynqakssqsaimvdtkgeriiinypspdllpdae
wleeidfsqwdvvladvrwhdgakkaftlarqagvmtvldgditpqdiselvalsdhaaf
sepglarltgvkemasalkqaqtltnghvyvtqgsagcdwlenggrqhqpafkvdvvdtt
gagdvfhgalavalatsgdlaesvrfasgvaalkctrpggragipdcdqtrsflslfvle
hhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7agkB (B:)
mirvacvgitvmdriyyveglptesgkyvarnytevgggpaataavaaarlgaqvdfigr
vgdddtgnsllaeleswgvntrytkrynqakssqsaimvdtkgeriiinypspdllpdae
wleeidfsqwdvvladvrwhdgakkaftlarqagvmtvldgditpqdiselvalsdhaaf
sepglarltgvkemasalkqaqtltnghvyvtqgsagcdwlenggrqhqpafkvdvvdtt
gagdvfhgalavalatsgdlaesvrfasgvaalkctrpggragipdcdqtrsflslfvl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7agkC (C:)
mirvacvgitvmdriyyveglptesgkyvarnytevgggpaataavaaarlgaqvdfigr
vgdddtgnsllaeleswgvntrytkrynqakssqsaimvdtkgeriiinypspdllpdae
wleeidfsqwdvvladvrwhdgakkaftlarqagvmtvldgditpqdiselvalsdhaaf
sepglarltgvkemasalkqaqtltnghvyvtqgsagcdwlenggrqhqpafkvdvvdtt
gagdvfhgalavalatsgdlaesvrfasgvaalkctrpggragipdcdqtrsflslfvle
hhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7agkC (C:)
mirvacvgitvmdriyyveglptesgkyvarnytevgggpaataavaaarlgaqvdfigr
vgdddtgnsllaeleswgvntrytkrynqakssqsaimvdtkgeriiinypspdllpdae
wleeidfsqwdvvladvrwhdgakkaftlarqagvmtvldgditpqdiselvalsdhaaf
sepglarltgvkemasalkqaqtltnghvyvtqgsagcdwlenggrqhqpafkvdvvdtt
gagdvfhgalavalatsgdlaesvrfasgvaalkctrpggragipdcdqtrsflslfvle

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7agkD (D:)
mirvacvgitvmdriyyveglptesgkyvarnytevgggpaataavaaarlgaqvdfigr
vgdddtgnsllaeleswgvntrytkrynqakssqsaimvdtkgeriiinypspdllpdae
wleeidfsqwdvvladvrwhdgakkaftlarqagvmtvldgditpqdiselvalsdhaaf
sepglarltgvkemasalkqaqtltnghvyvtqgsagcdwlenggrqhqpafkvdvvdtt
gagdvfhgalavalatsgdlaesvrfasgvaalkctrpggragipdcdqtrsflslfvle
hhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7agkD (D:)
irvacvgitvmdriyyveglptesgkyvarnytevgggpaataavaaarlgaqvdfigrv
gdddtgnsllaeleswgvntrytkrynqakssqsaimvdtkgeriiinypspdllpdaew
leeidfsqwdvvladvrwhdgakkaftlarqagvmtvldgditpqdiselvalsdhaafs
epglarltgvkemasalkqaqtltnghvyvtqgsagcdwlenggrqhqpafkvdvvdttg
agdvfhgalavalatsgdlaesvrfasgvaalkctrpggragipdcdqtrsflslf