PDB entry 7afd

View 7afd on RCSB PDB site
Description: bacterial 30s ribosomal subunit assembly complex state a (head domain)
Deposited on 2020-09-19, released 2021-07-07
The last revision was dated 2021-12-08, with a file datestamp of 2021-12-03.
Experiment type: EM
Resolution: 3.44 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: 16SrRNA of the head domain (residue C931 to G1386)
    Species: Escherichia coli [TaxId:562]
  • Chain 'B':
    Compound: 30S ribosomal protein S2
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 30S ribosomal protein S3
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: 30S ribosomal protein S7
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: 30S ribosomal protein S9
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: 30S ribosomal protein S10
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: 30S ribosomal protein S13
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: 30S ribosomal protein S14
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: 30S ribosomal protein S19
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG, ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain '1':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7afdB (B:)
matvsmrdmlkagvhfghqtrywnpkmkpfifgarnkvhiinlektvpmfnealaelnki
asrkgkilfvgtkraaseavkdaalscdqffvnhrwlggmltnwktvrqsikrlkdletq
sqdgtfdkltkkealmrtreleklenslggikdmgglpdalfvidadhehiaikeannlg
ipvfaivdtnsdpdgvdfvipgnddairavtlylgavaatvregrsqdlasqaeesfvea
e

    Sequence, based on observed residues (ATOM records):
    >7afdB (B:)
vsmrdmlkagvhfghqtrywnpkmkpfifgarnkvhiinlektvpmfnealaelnkiasr
kgkilfvgtkraaseavkdaalscdqffvnhrwlggmltnwktvrqsikrlkdletqsqd
gtfdkltkkealmrtreleklenslggikdmgglpdalfvidadhehiaikeannlgipv
faivdtnsdpdgvdfvipgnddairavtlylgavaatvregrsq

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7afdC (C:)
mgqkvhpngirlgivkpwnstwfantkefadnldsdfkvrqyltkelakasvsrivierp
aksirvtihtarpgivigkkgedveklrkvvadiagvpaqiniaevrkpeldaklvadsi
tsqlerrvmfrramkravqnamrlgakgikvevsgrlggaeiartewyregrvplhtlra
didyntseahttygvigvkvwifkgeilggmaaveqpekpaaqpkkqqrkgrk

    Sequence, based on observed residues (ATOM records):
    >7afdC (C:)
gqkvhpngirlgivkpwnstwfantkefadnldsdfkvrqyltkelakasvsrivierpa
ksirvtihtarpgivigkkgedveklrkvvadiagvpaqiniaevrkpeldaklvadsit
sqlerrvmfrramkravqnamrlgakgikvevsgrlggaeiartewyregrvplhtlrad
idyntseahttygvigvkvwifkgeilggma

  • Chain 'G':
    Sequence, based on SEQRES records:
    >7afdG (G:)
mprrrvigqrkilpdpkfgsellakfvnilmvdgkkstaesivysaletlaqrsgksele
afevalenvrptvevksrrvggstyqvpvevrpvrrnalamrwiveaarkrgdksmalrl
anelsdaaenkgtavkkredvhrmaeankafahyrwlslrsfshqagasskqpalgyln

    Sequence, based on observed residues (ATOM records):
    >7afdG (G:)
prrrvigqrkilpdpkfgsellakfvnilmvdgkkstaesivysaletlaqrsgkselea
fevalenvrptvevksrrvggstyqvpvevrpvrrnalamrwiveaarkrgdksmalrla
nelsdaaenkgtavkkredvhrmaeankafa

  • Chain 'I':
    Sequence, based on SEQRES records:
    >7afdI (I:)
maenqyygtgrrkssaarvfikpgngkivinqrsleqyfgretarmvvrqplelvdmvek
ldlyitvkgggisgqagairhgitralmeydeslrselrkagfvtrdarqverkkvglrk
arrrpqfskr

    Sequence, based on observed residues (ATOM records):
    >7afdI (I:)
nqyygtgrrkssaarvfikpgngkivinqrsleqyfgretarmvvrqplelvdmvekldl
yitvkgggisgqagairhgitralmeydeslrselrkagfvtrdarqverkkvglrkarr
rpqfskr

  • Chain 'J':
    Sequence, based on SEQRES records:
    >7afdJ (J:)
mqnqririrlkafdhrlidqataeivetakrtgaqvrgpiplptrkerftvlisphvnkd
ardqyeirthlrlvdiveptektvdalmrldlaagvdvqislg

    Sequence, based on observed residues (ATOM records):
    >7afdJ (J:)
qririrlkafdhrlidqataeivetakrtgaqvrgpiplptrkerftvlisphvnkdard
qyeirthlrlvdiveptektvdalmrldlaagvdvqisl

  • Chain 'M':
    Sequence, based on SEQRES records:
    >7afdM (M:)
mariaginipdhkhavialtsiygvgktrskailaaagiaedvkiselsegqidtlrdev
akfvvegdlrreismsikrlmdlgcyrglrhrrglpvrgqrtktnartrkgprkpikk

    Sequence, based on observed residues (ATOM records):
    >7afdM (M:)
ariaginipdhkhavialtsiygvgktrskailaaagiaedvkiselsegqidtlrdeva
kfvvegdlrreismsikrlmdlgcyrglrhrrglpvrgqrtktnartrkgprkp

  • Chain 'N':
    Sequence, based on SEQRES records:
    >7afdN (N:)
makqsmkarevkrvaladkyfakraelkaiisdvnasdedrwnavlklqtlprdsspsrq
rnrcrqtgrphgflrkfglsrikvreaamrgeipglkkasw

    Sequence, based on observed residues (ATOM records):
    >7afdN (N:)
akqsmkarevkrvaladkyfakraelkaiisdvnasdedrwnavlklqtlprdsspsrqr
nrcrqtgrphgflrkfglsrikvreaamrgeipglkkasw

  • Chain 'S':
    Sequence, based on SEQRES records:
    >7afdS (S:)
mprslkkgpfidlhllkkvekavesgdkkplrtwsrrstifpnmigltiavhngrqhvpv
fvtdemvghklgefaptrtyrghaadkkakkk

    Sequence, based on observed residues (ATOM records):
    >7afdS (S:)
prslkkgpfidlhllkkvekavesgdkkplrtwsrrstifpnmigltiavhngrqhvpvf
vtdemvghklgefaptrtyrgh