SCOPe 2.08: Structural Classification of Proteins

PDB entry 7ad1

View 7ad1 on RCSB PDB site
Description: cryo-em structure of a prefusion stabilized sars-cov-2 spike (d614n, r682s, r685g, a892p, a942p and v987p)(one up trimer)
Deposited on 2020-09-14, released 2020-11-04
The last revision was dated 2021-01-27, with a file datestamp of 2021-01-22.
Experiment type: EM
Resolution: 2.92 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Spike glycoprotein,Envelope glycoprotein,Spike glycoprotein,Envelope glycoprotein,SARS-CoV-2 S protein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S gene
Database cross-references and differences (RAF-indexed):
- Uniprot P0DTC2
  - conflict (613)
  - conflict (891)
  - conflict (941)
  - conflict (986)
- Uniprot M1E1E4
- PDB 7AD1
Chain 'B':
Compound: Spike glycoprotein,Envelope glycoprotein,Spike glycoprotein,Envelope glycoprotein,SARS-CoV-2 S protein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S gene
Database cross-references and differences (RAF-indexed):
- Uniprot P0DTC2
  - conflict (613)
  - conflict (891)
  - conflict (941)
  - conflict (986)
- Uniprot M1E1E4
- PDB 7AD1
Chain 'C':
Compound: Spike glycoprotein,Envelope glycoprotein,Spike glycoprotein,Envelope glycoprotein,SARS-CoV-2 S protein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S gene
Database cross-references and differences (RAF-indexed):
- Uniprot P0DTC2
  - conflict (613)
  - conflict (891)
  - conflict (941)
  - conflict (986)
- Uniprot M1E1E4
- PDB 7AD1
Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

Chain 'A':
Sequence, based on SEQRES records:

>7ad1A (A:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqnvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnspsragsvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagpalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstpsalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldkpeaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqgsgyipeaprdgqayvrkdgewvllstflgrslevlfqgpgslpetgggsdy
kddddkggggsggggsggggsggggsggggshhhhhh

Sequence, based on observed residues (ATOM records):

>7ad1A (A:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihpvlpdgvyfasteksni
irgwifgttldsksllivnnatnvvikvcctfeyvsfknlrefvfknidgyfkiyskhtp
inlvrdlpqgfsaleplvdlpiginitrfqtllaayyvgylqprtfllkynengtitdav
dcaldplsetkctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfas
vyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrq
iapgqtgkiadynyklpddftgcviawnsnnldynylyrlfrksnlkpferdistfplqs
ygfqptngyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesn
kkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqnvn
ctevnvfqtragcligaehvnnsyecdipigagicasyqtqsiiaytmslgaensvaysn
nsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltg
iaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskskrsfiedllfnkvtfng
ltvlpplltdemiaqytsallagtitsgwtfgagpalqipfamqmayrfngigvtqnvly
enqklianqfnsaigkiqdslsstpsalgklqdvvnqnaqalntlvkqlssnfgaissvl
ndilsrldkpeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqs
krvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpregvfvs
ngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpelds

Chain 'B':
Sequence, based on SEQRES records:

>7ad1B (B:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqnvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnspsragsvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagpalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstpsalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldkpeaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqgsgyipeaprdgqayvrkdgewvllstflgrslevlfqgpgslpetgggsdy
kddddkggggsggggsggggsggggsggggshhhhhh

Sequence, based on observed residues (ATOM records):

>7ad1B (B:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhpvlpfndgvyfasteksnii
rgwifgttldsktqsllivnnatnvvikvcnnctfeyvsfknlrefvfknyfkiyskhtp
indlpqgfsaleplvdlpiginitrfqtllyyvgylqprtfllkynengtitdavdcald
plsetkctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawn
rkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgq
tgkiadynyklpddftgcviawnsnnldskvggnynylyrkpferplqsygfqptngvgy
qpyrvvvlsftvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadt
tdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqnvnctevnvfqtragclig
aehvnnsyecdipigagicasyqsqsiiaytmslgaensvaysnnsiaiptnftisvtte
ilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqv
kqiyktppikdfggfnfsqilpdpskskrsfiedllfnkvtkfngltvlpplltdemiaq
ytsallagtitsgwtfgagpalqipfamqmayrfngigvtqnvlyenqklianqfnsaig
kiqdslsstpsalgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldkpeaevq
idrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsf
pqsaphgvvflhvtyvpaqeknfttapaichdgkahfpregvfvsngthwfvtqrnfyep
qiittdntfvsgncdvvigivnntvydplqpelds

Chain 'C':
Sequence, based on SEQRES records:

>7ad1C (C:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqnvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnspsragsvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagpalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstpsalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldkpeaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqgsgyipeaprdgqayvrkdgewvllstflgrslevlfqgpgslpetgggsdy
kddddkggggsggggsggggsggggsggggshhhhhh

Sequence, based on observed residues (ATOM records):

>7ad1C (C:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfnpvlpfndgvyfasteksnii
rgwifgttldsktqsllivnnatnvvikvcctfeyvsfknlrefvfknidgyfkiyskht
pinlvrdlpqgfsaleplvdlpiginitrfqtllayyvgylqprtfllkynengtitdav
dcaldplsetkctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfas
vyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrq
iapgqtgkiadynyklpddftgcviawnsnnldskynylyrkpferdistplqsygfqpt
ngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkfl
pfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqnvnctev
nvfqtragcligaehvnnsyecdipigagicasyqtqsiiaytmslgaensvaysnnsia
iptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiave
qdkntqevfaqvkqiyktppikdfggfnfsqilpdpskskrsfiedllfnkvtngltvlp
plltdemiaqytsallagtitsgwtfgagpalqipfamqmayrfngigvtqnvlyenqkl
ianqfnsaigkiqdslsstpsalgklqdvvnqnaqalntlvkqlssnfgaissvlndils
rldkpeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdf
cgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpregvfvsngthw
fvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpelds